eu.etaxonomy.cdm.io.berlinModel.in
Class BerlinModelImportBase

java.lang.Object
  eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration
      eu.etaxonomy.cdm.io.common.CdmIoBase<STATE>
          eu.etaxonomy.cdm.io.common.CdmImportBase<CONFIG,STATE>
              eu.etaxonomy.cdm.io.common.DbImportBase<BerlinModelImportState,BerlinModelImportConfigurator>
                  eu.etaxonomy.cdm.io.berlinModel.in.BerlinModelImportBase

All Implemented Interfaces:

ICdmApplicationConfiguration, ICdmImport<BerlinModelImportConfigurator,BerlinModelImportState>, ICdmIO<BerlinModelImportState>, IIoObservable, IPartitionedIO<BerlinModelImportState>, org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

Direct Known Subclasses:

BerlinModelAuthorImport, BerlinModelAuthorTeamImport, BerlinModelCommonNamesImport, BerlinModelFactsImport, BerlinModelGeneralImportValidator, BerlinModelNameFactsImport, BerlinModelNameStatusImport, BerlinModelOccurrenceImport, BerlinModelOccurrenceSourceImport, BerlinModelRefDetailImport, BerlinModelReferenceImport, BerlinModelTaxonImport, BerlinModelTaxonNameImport, BerlinModelTaxonNameRelationImport, BerlinModelTaxonRelationImport, BerlinModelTypesImport, BerlinModelUserImport, BerlinModelWebMarkerCategoryImport, BerlinModelWebMarkerImport

public abstract class BerlinModelImportBase
extends DbImportBase<BerlinModelImportState,BerlinModelImportConfigurator>
implements ICdmIO<BerlinModelImportState>, IPartitionedIO<BerlinModelImportState>

Version:

1.0

Author:

a.mueller

Nested Class Summary

Nested classes/interfaces inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

CdmImportBase.TermMatchMode

Field Summary

Fields inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

CREATE, IMAGE_GALLERY, READ_MEDIA_DATA, uuidUserDefinedAnnotationTypeVocabulary, uuidUserDefinedExtensionTypeVocabulary, uuidUserDefinedFeatureVocabulary, uuidUserDefinedMarkerTypeVocabulary, uuidUserDefinedMeasurementUnitVocabulary, uuidUserDefinedModifierVocabulary, uuidUserDefinedNamedAreaLevelVocabulary, uuidUserDefinedNamedAreaVocabulary, uuidUserDefinedRankVocabulary, uuidUserDefinedReferenceSystemVocabulary, uuidUserDefinedStateVocabulary, uuidUserDefinedStatisticalMeasureVocabulary, uuidUserDefinedTaxonRelationshipTypeVocabulary

Fields inherited from class eu.etaxonomy.cdm.io.common.CdmIoBase

ioName

Fields inherited from class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration

applicationContext

Fields inherited from interface eu.etaxonomy.cdm.io.common.ICdmIO

FEATURE_STORE, NOMREF_DETAIL_STORE, NOMREF_STORE, PERSON_STORE, REF_DETAIL_STORE, REFERENCE_STORE, SPECIMEN_STORE, TAXON_STORE, TAXONNAME_STORE, TEAM_STORE, USER_STORE

Fields inherited from interface eu.etaxonomy.cdm.io.common.IPartitionedIO

ID_LIST_TOKEN

Constructor Summary

BerlinModelImportBase(String tableName, String pluralString)

Method Summary

protected boolean	doCreatedUpdatedNotes(BerlinModelImportState state, AnnotatableEntity annotatableEntity, ResultSet rs)
protected boolean	doCreatedUpdatedNotes(BerlinModelImportState state, AnnotatableEntity annotatableEntity, ResultSet rs, boolean excludeUpdated)
protected boolean	doIdCreatedUpdatedNotes(BerlinModelImportState state, DescriptionElementBase descriptionElement, ResultSet rs, String id, String namespace)
protected boolean	doIdCreatedUpdatedNotes(BerlinModelImportState state, IdentifiableEntity identifiableEntity, ResultSet rs, long id, String namespace)
protected boolean	doIdCreatedUpdatedNotes(BerlinModelImportState state, IdentifiableEntity identifiableEntity, ResultSet rs, long id, String namespace, boolean excludeUpdated)
protected String	getIdQuery(BerlinModelImportState state)
protected NamedArea	getOtherAreas(BerlinModelImportState state, String emCodeString, String tdwgCodeString)
protected Reference	getReferenceFromMaps(Map<String,Reference> firstDetailMap, Map<String,Reference> secondDetailMap, Map<String,Reference> firstRefMap, Map<String,Reference> secondRefMap, String nomRefDetailFk, String nomRefFk) Searches first in the detail maps then in the ref maps for a reference.
protected Reference	getReferenceOnlyFromMaps(Map<String,Reference> firstRefMap, Map<String,Reference> secondRefMap, String nomRefFk) As getReferenceFromMaps but search is performed only on references, not on detail maps.
protected Taxon	getTaxon(BerlinModelImportState state, int taxonId, Map<String,TaxonBase> taxonMap, int factId)

Methods inherited from class eu.etaxonomy.cdm.io.common.DbImportBase

checkSqlServerColumnExists, doId, doId, doInvoke, doLogPerLoop, doNotes, getPluralString, getRecordQuery, getTableName, getUser, getValueMap, handleForeignKey, loopNeedsHandling, resultSetHasColumn

Methods inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

addOriginalSource, addOriginalSource, fillMissingEpithets, fillMissingEpithetsForTaxa, getAcceptedTaxon, getAnnotationType, getExtensionType, getExtensionType, getFeature, getFeature, getFeaturePlaceholder, getImageMedia, getLanguage, getLanguage, getMarkerType, getMarkerType, getMarkerType, getMeasurementUnit, getModifier, getNamedArea, getNamedArea, getNamedAreaLevel, getPresenceTerm, getRank, getReferenceSystem, getSpecimenDescription, getSpecimenDescription, getStateTerm, getStateTerm, getStatisticalMeasure, getTaxonDescription, getTaxonDescription, getTaxonNameDescription, getTaxonNameDescription, getTaxonRelationshipType, getVocabulary, makeTree, makeTreeMemSave, NB, nullSafeDouble, nullSafeFloat, nullSafeInt

Methods inherited from class eu.etaxonomy.cdm.io.common.CdmIoBase

addObserver, addObservers, check, commitTransaction, countObservers, countSteps, doCheck, fire, fireProgressEvent, fireWarningEvent, fireWarningEvent, flush, getInstance, getObservers, getSuccessString, invoke, isBlank, isIgnore, isNotBlank, removeObserver, removeObservers, rollbackTransaction, startTransaction, startTransaction, updateProgress, updateProgress, warnProgress

Methods inherited from class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration

authenticate, getAgentService, getAuthenticationManager, getBean, getClassificationService, getCollectionService, getCommonService, getDatabaseService, getDescriptionService, getFeatureNodeService, getFeatureTreeService, getGrantedAuthorityService, getGroupService, getIdentificationKeyService, getLocationService, getMainService, getMediaService, getNameService, getOccurrenceService, getPermissionEvaluator, getPolytomousKeyNodeService, getPolytomousKeyService, getReferenceService, getTaxonNodeService, getTaxonService, getTermService, getTransactionManager, getUserService, getVocabularyService, getWorkingSetService, NewConversation, setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface eu.etaxonomy.cdm.io.common.ICdmIO

check, fire, invoke, updateProgress, updateProgress, warnProgress

Methods inherited from interface eu.etaxonomy.cdm.io.common.IIoObservable

addObserver, addObservers, countObservers, getObservers, removeObserver, removeObservers

Methods inherited from interface eu.etaxonomy.cdm.io.common.IPartitionedIO

commitTransaction, doPartition, getPluralString, getReferenceService, getRelatedObjectsForPartition, startTransaction

Constructor Detail

BerlinModelImportBase

public BerlinModelImportBase(String tableName,
                             String pluralString)

Method Detail

getIdQuery

protected String getIdQuery(BerlinModelImportState state)

Specified by:

getIdQuery in class DbImportBase<BerlinModelImportState,BerlinModelImportConfigurator>

Returns:

doIdCreatedUpdatedNotes

protected boolean doIdCreatedUpdatedNotes(BerlinModelImportState state,
                                          DescriptionElementBase descriptionElement,
                                          ResultSet rs,
                                          String id,
                                          String namespace)
                                   throws SQLException

Throws:

SQLException

doIdCreatedUpdatedNotes

protected boolean doIdCreatedUpdatedNotes(BerlinModelImportState state,
                                          IdentifiableEntity identifiableEntity,
                                          ResultSet rs,
                                          long id,
                                          String namespace,
                                          boolean excludeUpdated)
                                   throws SQLException

Throws:

SQLException

doIdCreatedUpdatedNotes

protected boolean doIdCreatedUpdatedNotes(BerlinModelImportState state,
                                          IdentifiableEntity identifiableEntity,
                                          ResultSet rs,
                                          long id,
                                          String namespace)
                                   throws SQLException

Throws:

SQLException

doCreatedUpdatedNotes

protected boolean doCreatedUpdatedNotes(BerlinModelImportState state,
                                        AnnotatableEntity annotatableEntity,
                                        ResultSet rs)
                                 throws SQLException

Throws:

SQLException

doCreatedUpdatedNotes

protected boolean doCreatedUpdatedNotes(BerlinModelImportState state,
                                        AnnotatableEntity annotatableEntity,
                                        ResultSet rs,
                                        boolean excludeUpdated)
                                 throws SQLException

Throws:

SQLException

getTaxon

protected Taxon getTaxon(BerlinModelImportState state,
                         int taxonId,
                         Map<String,TaxonBase> taxonMap,
                         int factId)

Parameters:

state -

newTaxonId -

taxonMap -

factId -

Returns:

getReferenceFromMaps

protected Reference getReferenceFromMaps(Map<String,Reference> firstDetailMap,
                                         Map<String,Reference> secondDetailMap,
                                         Map<String,Reference> firstRefMap,
                                         Map<String,Reference> secondRefMap,
                                         String nomRefDetailFk,
                                         String nomRefFk)

Searches first in the detail maps then in the ref maps for a reference. Returns the reference as soon as it finds it in one of the map, according to the order of the map. If nomRefDetailFk is null no search on detail maps is performed. If one of the maps is null no search on the according map is performed.
You may define the order of search by the order you pass the maps but make sure to always pass the detail maps first.

Parameters:

firstDetailMap -

secondDetailMap -

firstRefMap -

secondRefMap -

nomRefDetailFk -

nomRefFk -

Returns:

getReferenceOnlyFromMaps

protected Reference getReferenceOnlyFromMaps(Map<String,Reference> firstRefMap,
                                             Map<String,Reference> secondRefMap,
                                             String nomRefFk)

As getReferenceFromMaps but search is performed only on references, not on detail maps.

Parameters:

firstRefMap -

secondRefMap -

nomRefFk -

Returns:

getOtherAreas

protected NamedArea getOtherAreas(BerlinModelImportState state,
                                  String emCodeString,
                                  String tdwgCodeString)