eu.etaxonomy.cdm.io.excel.taxa

Class TaxonExcelImporterBase

java.lang.Object

eu.etaxonomy.cdm.api.application.CdmRepository

eu.etaxonomy.cdm.io.common.CdmIoBase<STATE,ImportResult>

eu.etaxonomy.cdm.io.common.CdmImportBase<ExcelImportConfiguratorBase,STATE>

eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase<STATE>

eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase<TaxonExcelImportState,NormalExplicitRow>

eu.etaxonomy.cdm.io.excel.taxa.TaxonExcelImporterBase

All Implemented Interfaces:

ICdmRepository, ICdmImport<ExcelImportConfiguratorBase,TaxonExcelImportState>, ICdmIO<TaxonExcelImportState>, IIoObservable, Serializable, org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

Direct Known Subclasses:

NormalExplicitImport

public abstract class TaxonExcelImporterBase
extends ExcelTaxonOrSpecimenImportBase<TaxonExcelImportState,NormalExplicitRow>

Version:

1.0

Author:

a.babadshanjan

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase

ExcelTaxonOrSpecimenImportBase.KeyValue, ExcelTaxonOrSpecimenImportBase.SourceType

Nested classes/interfaces inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

CdmImportBase.TermMatchMode

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	ACCEPTED_ID_COLUMN
protected static String	AUTHOR_COLUMN
protected static String	AUTHORS_COLUMN
protected static String	AUTHORSHIP_COLUMN
protected static String	BASIONYM_AUTHOR_COLUMN
protected static String	BASIONYM_COLUMN
protected static String	CITATION_TYPE_COLUMN
protected static String	COLLATION_COLUMN
protected static String	COUNTRY_COLUMN
protected static String	DATE_COLUMN
protected static String	DISTRIBUTION_COLUMN
protected static String	FAMILY_COLUMN
protected static String	FULLNAME_COLUMN
protected static String	GENUS_COLUMN
protected static String	HYBRID_COLUMN
protected static String	HYBRID_GENUS_COLUMN
protected static String	ID_COLUMN
protected static String	IMAGE_COLUMN
protected static String	INFRA_FAMILY_COLUMN
protected static String	INFRA_GENUS_COLUMN
protected static String	INFRA_SPECIES_COLUMN
protected static String	INFRA_SPECIES_RANK_COLUMN
protected static String	IPNI_ID_COLUMN
protected static String	LANGUAGE_COLUMN
protected static String	NAMESTATUS_COLUMN
protected static String	NOMENCLATURAL_STATUS_COLUMN
protected static String	NOMENCLATURAL_SYNONYM_COLUMN
protected static String	PAGE_COLUMN
protected static String	PARENT_ID_COLUMN
protected static String	PROTOLOGUE_COLUMN
protected static String	PUBLICATION_COLUMN
protected static String	PUBLICATION_YEAR_COLUMN
protected static String	PUBLISHING_AUTHOR_COLUMN
protected static String	RANK_COLUMN
protected static String	REFERENCE_COLUMN
protected static String	REMARKS_COLUMN
protected static String	REPLACED_SYNONYM_COLUMN
protected static String	SOURCE_COLUMN
protected static String	SOURCE_ID_COLUMN
protected static String	SPECIES_COLUMN
protected static String	SYNONYM_COLUMN
protected static String	TAXONOMIC_STATUS
protected static String	TDWG_COLUMN
protected static String	VERNACULAR_NAME_COLUMN
protected static String	VERSION_COLUMN
protected static String	YEAR_COLUMN

Fields inherited from class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase

CDM_UUID_COLUMN, FULL_NAME_COLUMN, IGNORE_COLUMN, INFRASPECIFIC_EPITHET_COLUMN, LANGUAGE, SPECIFIC_EPITHET_COLUMN, TAXON_UUID_COLUMN

Fields inherited from class eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase

SCIENTIFIC_NAME_COLUMN

Fields inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

CREATE, IMAGE_GALLERY, READ_MEDIA_DATA, uuidUserDefinedAnnotationTypeVocabulary, uuidUserDefinedExtensionTypeVocabulary, uuidUserDefinedFeatureVocabulary, uuidUserDefinedIdentifierTypeVocabulary, uuidUserDefinedKindOfUnitVocabulary, uuidUserDefinedMarkerTypeVocabulary, uuidUserDefinedMeasurementUnitVocabulary, uuidUserDefinedModifierVocabulary, uuidUserDefinedNamedAreaLevelVocabulary, uuidUserDefinedNamedAreaVocabulary, uuidUserDefinedPresenceAbsenceVocabulary, uuidUserDefinedRankVocabulary, uuidUserDefinedReferenceSystemVocabulary, uuidUserDefinedStateVocabulary, uuidUserDefinedStatisticalMeasureVocabulary, uuidUserDefinedTaxonRelationshipTypeVocabulary

Fields inherited from class eu.etaxonomy.cdm.io.common.CdmIoBase

ioName

Fields inherited from class eu.etaxonomy.cdm.api.application.CdmRepository

applicationContext

Fields inherited from interface eu.etaxonomy.cdm.io.common.ICdmIO

FEATURE_STORE, NOMREF_STORE, REFERENCE_STORE, SPECIMEN_STORE, TAXON_STORE, TAXONNAME_STORE, TEAM_STORE

Constructor Summary

Constructors

Constructor and Description
TaxonExcelImporterBase()

Method Summary

Methods inherited from class eu.etaxonomy.cdm.io.excel.common.ExcelTaxonOrSpecimenImportBase

analyzeFeatures, analyzeRecord, analyzeSingleValue, createDataHolderRow, fireWarningEvent, handleExtensions, isInteger, makeKeyValue

Methods inherited from class eu.etaxonomy.cdm.io.excel.common.ExcelImporterBase

doCheck, doInvoke, firstPass, floatString2IntStringValue, floatString2IntValue, getConfigurator, getTimePeriod, getValue, getWorksheetName, needsNomenclaturalCode, secondPass

Methods inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

addOriginalSource, addOriginalSource, fillMissingEpithets, fillMissingEpithetsForTaxa, getAcceptedTaxon, getAnnotationType, getByteArray, getDefaultResult, getDefaultTaxonDescription, getExtensionType, getExtensionType, getFeature, getFeature, getFeaturePlaceholder, getIdentiferType, getImageMedia, getImageMedia, getKindOfUnit, getLanguage, getLanguage, getMarkedTaxonDescription, getMarkerType, getMarkerType, getMarkerType, getMarkerType, getMeasurementUnit, getModifier, getNamedArea, getNamedArea, getNamedArea, getNamedAreaLevel, getNoDataResult, getPresenceTerm, getPresenceTerm, getRank, getReferenceSystem, getSpecimenDescription, getSpecimenDescription, getStateTerm, getStateTerm, getStatisticalMeasure, getTaxonDescription, getTaxonDescription, getTaxonNameDescription, getTaxonNameDescription, getTaxonRelationshipType, getVocabulary, makeTree, makeTreeMemSave, NB, nullSafeBoolean, nullSafeDouble, nullSafeFloat, nullSafeInt, parseAuthorString

Methods inherited from class eu.etaxonomy.cdm.io.common.CdmIoBase

addObserver, addObservers, check, commitTransaction, countObservers, countSteps, fire, fireProgressEvent, fireWarningEvent, fireWarningEvent, flush, getInstance, getObservers, getSuccessString, invoke, isBlank, isIgnore, isNotBlank, removeObserver, removeObservers, rollbackTransaction, startTransaction, startTransaction, updateProgress, updateProgress, warnProgress

Methods inherited from class eu.etaxonomy.cdm.api.application.CdmRepository

authenticate, getAgentService, getAmplificationService, getAnnotationService, getAuthenticationManager, getBean, getClassificationService, getCollectionService, getCommonService, getDatabaseService, getDescriptionService, getEntityConstraintViolationService, getEntityValidationService, getEventBaseService, getFeatureNodeService, getFeatureTreeService, getGrantedAuthorityService, getGroupService, getIdentificationKeyService, getLocationService, getMainService, getMediaService, getMetadataService, getNameService, getOccurrenceService, getPermissionEvaluator, getPolytomousKeyNodeService, getPolytomousKeyService, getPreferenceService, getPrimerService, getProgressMonitorService, getReferenceService, getRegistrationService, getRightsService, getSequenceService, getSession, getSessionFactory, getTaxonNodeService, getTaxonService, getTermService, getTransactionManager, getUserService, getVocabularyService, getWorkingSetService, NewConversation, setApplicationContext, setDataSource, setSessionFactory, setTransactionManager

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface eu.etaxonomy.cdm.io.common.ICdmImport

invoke

Methods inherited from interface eu.etaxonomy.cdm.io.common.ICdmIO

check, countSteps, fire, updateProgress, updateProgress, warnProgress

Methods inherited from interface eu.etaxonomy.cdm.io.common.IIoObservable

addObserver, addObservers, countObservers, getObservers, removeObserver, removeObservers

Field Detail

VERSION_COLUMN

protected static final String VERSION_COLUMN

See Also:

Constant Field Values

ID_COLUMN

protected static final String ID_COLUMN

See Also:

Constant Field Values

PARENT_ID_COLUMN

protected static final String PARENT_ID_COLUMN

See Also:

Constant Field Values

RANK_COLUMN

protected static final String RANK_COLUMN

See Also:

Constant Field Values

AUTHOR_COLUMN

protected static final String AUTHOR_COLUMN

See Also:

Constant Field Values

AUTHORS_COLUMN

protected static final String AUTHORS_COLUMN

See Also:

Constant Field Values

AUTHORSHIP_COLUMN

protected static final String AUTHORSHIP_COLUMN

See Also:

Constant Field Values

BASIONYM_AUTHOR_COLUMN

protected static final String BASIONYM_AUTHOR_COLUMN

See Also:

Constant Field Values

PUBLISHING_AUTHOR_COLUMN

protected static final String PUBLISHING_AUTHOR_COLUMN

See Also:

Constant Field Values

NAMESTATUS_COLUMN

protected static final String NAMESTATUS_COLUMN

See Also:

Constant Field Values

NOMENCLATURAL_STATUS_COLUMN

protected static final String NOMENCLATURAL_STATUS_COLUMN

See Also:

Constant Field Values

VERNACULAR_NAME_COLUMN

protected static final String VERNACULAR_NAME_COLUMN

See Also:

Constant Field Values

LANGUAGE_COLUMN

protected static final String LANGUAGE_COLUMN

See Also:

Constant Field Values

REFERENCE_COLUMN

protected static final String REFERENCE_COLUMN

See Also:

Constant Field Values

PROTOLOGUE_COLUMN

protected static final String PROTOLOGUE_COLUMN

See Also:

Constant Field Values

IMAGE_COLUMN

protected static final String IMAGE_COLUMN

See Also:

Constant Field Values

TDWG_COLUMN

protected static final String TDWG_COLUMN

See Also:

Constant Field Values

COUNTRY_COLUMN

protected static final String COUNTRY_COLUMN

See Also:

Constant Field Values

SYNONYM_COLUMN

protected static final String SYNONYM_COLUMN

See Also:

Constant Field Values

DATE_COLUMN

protected static final String DATE_COLUMN

See Also:

Constant Field Values

YEAR_COLUMN

protected static final String YEAR_COLUMN

See Also:

Constant Field Values

FAMILY_COLUMN

protected static final String FAMILY_COLUMN

See Also:

Constant Field Values

BASIONYM_COLUMN

protected static final String BASIONYM_COLUMN

See Also:

Constant Field Values

REPLACED_SYNONYM_COLUMN

protected static final String REPLACED_SYNONYM_COLUMN

See Also:

Constant Field Values

NOMENCLATURAL_SYNONYM_COLUMN

protected static final String NOMENCLATURAL_SYNONYM_COLUMN

See Also:

Constant Field Values

ACCEPTED_ID_COLUMN

protected static final String ACCEPTED_ID_COLUMN

See Also:

Constant Field Values

TAXONOMIC_STATUS

protected static final String TAXONOMIC_STATUS

See Also:

Constant Field Values

INFRA_FAMILY_COLUMN

protected static final String INFRA_FAMILY_COLUMN

See Also:

Constant Field Values

GENUS_COLUMN

protected static final String GENUS_COLUMN

See Also:

Constant Field Values

INFRA_GENUS_COLUMN

protected static final String INFRA_GENUS_COLUMN

See Also:

Constant Field Values

SPECIES_COLUMN

protected static final String SPECIES_COLUMN

See Also:

Constant Field Values

INFRA_SPECIES_COLUMN

protected static final String INFRA_SPECIES_COLUMN

See Also:

Constant Field Values

INFRA_SPECIES_RANK_COLUMN

protected static final String INFRA_SPECIES_RANK_COLUMN

See Also:

Constant Field Values

FULLNAME_COLUMN

protected static final String FULLNAME_COLUMN

See Also:

Constant Field Values

HYBRID_GENUS_COLUMN

protected static final String HYBRID_GENUS_COLUMN

See Also:

Constant Field Values

HYBRID_COLUMN

protected static final String HYBRID_COLUMN

See Also:

Constant Field Values

PUBLICATION_COLUMN

protected static final String PUBLICATION_COLUMN

See Also:

Constant Field Values

COLLATION_COLUMN

protected static final String COLLATION_COLUMN

See Also:

Constant Field Values

PAGE_COLUMN

protected static final String PAGE_COLUMN

See Also:

Constant Field Values

PUBLICATION_YEAR_COLUMN

protected static final String PUBLICATION_YEAR_COLUMN

See Also:

Constant Field Values

REMARKS_COLUMN

protected static final String REMARKS_COLUMN

See Also:

Constant Field Values

DISTRIBUTION_COLUMN

protected static final String DISTRIBUTION_COLUMN

See Also:

Constant Field Values

CITATION_TYPE_COLUMN

protected static final String CITATION_TYPE_COLUMN

See Also:

Constant Field Values

IPNI_ID_COLUMN

protected static final String IPNI_ID_COLUMN

See Also:

Constant Field Values

SOURCE_COLUMN

protected static final String SOURCE_COLUMN

See Also:

Constant Field Values

SOURCE_ID_COLUMN

protected static final String SOURCE_ID_COLUMN

See Also:

Constant Field Values

Constructor Detail

TaxonExcelImporterBase

public TaxonExcelImporterBase()