eu.etaxonomy.cdm.io.sdd.in

Class SDDDataSetImport

java.lang.Object

eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration

eu.etaxonomy.cdm.io.common.CdmIoBase<STATE>

eu.etaxonomy.cdm.io.common.CdmImportBase<SDDImportConfigurator,SDDImportState>

eu.etaxonomy.cdm.io.sdd.in.SDDDataSetImport

All Implemented Interfaces:

ICdmApplicationConfiguration, ICdmImport<SDDImportConfigurator,SDDImportState>, ICdmIO<SDDImportState>, IIoObservable, Serializable, org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

@Component
public class SDDDataSetImport
extends CdmImportBase<SDDImportConfigurator,SDDImportState>
implements ICdmImport<SDDImportConfigurator,SDDImportState>

This class is not used yet. It is meant for refactoring the SDD import.

Version:

1.0

Author:

a.mueller

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

CdmImportBase.TermMatchMode

Field Summary

Fields

Modifier and Type	Field and Description
protected Class<ICdmIO>[]	ioClassList

Fields inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

CREATE, IMAGE_GALLERY, READ_MEDIA_DATA, uuidUserDefinedAnnotationTypeVocabulary, uuidUserDefinedExtensionTypeVocabulary, uuidUserDefinedFeatureVocabulary, uuidUserDefinedIdentifierTypeVocabulary, uuidUserDefinedKindOfUnitVocabulary, uuidUserDefinedMarkerTypeVocabulary, uuidUserDefinedMeasurementUnitVocabulary, uuidUserDefinedModifierVocabulary, uuidUserDefinedNamedAreaLevelVocabulary, uuidUserDefinedNamedAreaVocabulary, uuidUserDefinedPresenceAbsenceVocabulary, uuidUserDefinedRankVocabulary, uuidUserDefinedReferenceSystemVocabulary, uuidUserDefinedStateVocabulary, uuidUserDefinedStatisticalMeasureVocabulary, uuidUserDefinedTaxonRelationshipTypeVocabulary

Fields inherited from class eu.etaxonomy.cdm.io.common.CdmIoBase

ioName

Fields inherited from class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration

applicationContext

Fields inherited from interface eu.etaxonomy.cdm.io.common.ICdmIO

FEATURE_STORE, NOMREF_STORE, REFERENCE_STORE, SPECIMEN_STORE, TAXON_STORE, TAXONNAME_STORE, TEAM_STORE

Constructor Summary

Constructors

Constructor and Description
SDDDataSetImport()

Method Summary

Methods

Modifier and Type	Method and Description
protected void	associateImageWithCdmBase(String refMO, CdmBase cb)
boolean	doCheck(SDDImportState state)
void	doInvoke(SDDImportState state) invoke method to be implemented by implementing classes
protected void	importAgents(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importCharacters(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState state)
protected void	importCharacterTrees(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importCodedDescriptions(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importDataset(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState state)
protected void	importDatasetLanguage(org.jdom.Element elDataset, SDDImportState state)
protected void	importDatasetRepresentation(org.jdom.Element parent, org.jdom.Namespace sddNamespace)
protected void	importDescriptiveConcepts(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importGeographicAreas(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importIPRStatements(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState state)
protected void	importMediaObjects(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importPublications(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importRepresentation(org.jdom.Element parent, org.jdom.Namespace sddNamespace, VersionableEntity ve, String id, SDDImportState state)
protected void	importRevisionData(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace)
protected void	importSpecimens(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importTaxonHierarchies(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importTaxonNames(org.jdom.Element elDataset, org.jdom.Namespace sddNamespace, SDDImportState cdmState)
protected void	importTechnicalMetadata(org.jdom.Element root, org.jdom.Namespace sddNamespace, SDDImportConfigurator sddConfig)
protected boolean	isIgnore(SDDImportState state) Returns true if this (IO-)class should be ignored during the import/export process.
protected void	makeIoClassList()

Methods inherited from class eu.etaxonomy.cdm.io.common.CdmImportBase

addOriginalSource, addOriginalSource, fillMissingEpithets, fillMissingEpithetsForTaxa, getAcceptedTaxon, getAnnotationType, getByteArray, getExtensionType, getExtensionType, getFeature, getFeature, getFeaturePlaceholder, getIdentiferType, getImageMedia, getKindOfUnit, getLanguage, getLanguage, getMarkerType, getMarkerType, getMarkerType, getMarkerType, getMeasurementUnit, getModifier, getNamedArea, getNamedArea, getNamedArea, getNamedAreaLevel, getPresenceTerm, getPresenceTerm, getRank, getReferenceSystem, getSpecimenDescription, getSpecimenDescription, getStateTerm, getStateTerm, getStatisticalMeasure, getTaxonDescription, getTaxonDescription, getTaxonNameDescription, getTaxonNameDescription, getTaxonRelationshipType, getVocabulary, makeTree, makeTreeMemSave, NB, nullSafeBoolean, nullSafeDouble, nullSafeFloat, nullSafeInt, parseAuthorString

Methods inherited from class eu.etaxonomy.cdm.io.common.CdmIoBase

addObserver, addObservers, check, commitTransaction, countObservers, countSteps, fire, fireProgressEvent, fireWarningEvent, fireWarningEvent, flush, getInstance, getObservers, getSuccessString, invoke, isBlank, isNotBlank, removeObserver, removeObservers, rollbackTransaction, startTransaction, startTransaction, updateProgress, updateProgress, warnProgress

Methods inherited from class eu.etaxonomy.cdm.api.application.CdmApplicationDefaultConfiguration

authenticate, getAgentService, getAmplificationService, getAnnotationService, getAuthenticationManager, getBean, getClassificationService, getCollectionService, getCommonService, getDatabaseService, getDescriptionService, getEntityConstraintViolationService, getEntityValidationService, getEventBaseService, getFeatureNodeService, getFeatureTreeService, getGrantedAuthorityService, getGroupService, getIdentificationKeyService, getLocationService, getMainService, getMediaService, getMetadataService, getNameService, getOccurrenceService, getPermissionEvaluator, getPolytomousKeyNodeService, getPolytomousKeyService, getPreferenceService, getPrimerService, getProgressMonitorService, getReferenceService, getSequenceService, getTaxonNodeService, getTaxonService, getTermService, getTransactionManager, getUserService, getVocabularyService, getWorkingSetService, NewConversation, setApplicationContext, setDataSource, setSessionFactory, setTransactionManager

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface eu.etaxonomy.cdm.io.common.ICdmImport

getByteArray

Methods inherited from interface eu.etaxonomy.cdm.io.common.ICdmIO

check, fire, invoke, updateProgress, updateProgress, warnProgress

Methods inherited from interface eu.etaxonomy.cdm.io.common.IIoObservable

addObserver, addObservers, countObservers, getObservers, removeObserver, removeObservers

Field Detail

ioClassList

protected Class<ICdmIO>[] ioClassList

Constructor Detail

SDDDataSetImport

public SDDDataSetImport()

Method Detail

makeIoClassList

protected void makeIoClassList()

doCheck

public boolean doCheck(SDDImportState state)

Specified by:

doCheck in class CdmIoBase<SDDImportState>

doInvoke

public void doInvoke(SDDImportState state)

Description copied from class: CdmIoBase

invoke method to be implemented by implementing classes

Specified by:

doInvoke in class CdmIoBase<SDDImportState>

isIgnore

protected boolean isIgnore(SDDImportState state)

Description copied from class: CdmIoBase

Returns true if this (IO-)class should be ignored during the import/export process. This information is usually stored in the configuration

Specified by:

isIgnore in class CdmIoBase<SDDImportState>

Returns:

associateImageWithCdmBase

protected void associateImageWithCdmBase(String refMO,
                             CdmBase cb)

importDatasetRepresentation

protected void importDatasetRepresentation(org.jdom.Element parent,
                               org.jdom.Namespace sddNamespace)

importRepresentation

protected void importRepresentation(org.jdom.Element parent,
                        org.jdom.Namespace sddNamespace,
                        VersionableEntity ve,
                        String id,
                        SDDImportState state)

importTechnicalMetadata

protected void importTechnicalMetadata(org.jdom.Element root,
                           org.jdom.Namespace sddNamespace,
                           SDDImportConfigurator sddConfig)

importDataset

protected void importDataset(org.jdom.Element elDataset,
                 org.jdom.Namespace sddNamespace,
                 SDDImportState state)

importDatasetLanguage

protected void importDatasetLanguage(org.jdom.Element elDataset,
                         SDDImportState state)

importSpecimens

protected void importSpecimens(org.jdom.Element elDataset,
                   org.jdom.Namespace sddNamespace,
                   SDDImportState cdmState)

importRevisionData

protected void importRevisionData(org.jdom.Element elDataset,
                      org.jdom.Namespace sddNamespace)

importIPRStatements

protected void importIPRStatements(org.jdom.Element elDataset,
                       org.jdom.Namespace sddNamespace,
                       SDDImportState state)

importTaxonNames

protected void importTaxonNames(org.jdom.Element elDataset,
                    org.jdom.Namespace sddNamespace,
                    SDDImportState cdmState)

importCharacters

protected void importCharacters(org.jdom.Element elDataset,
                    org.jdom.Namespace sddNamespace,
                    SDDImportState state)

importCodedDescriptions

protected void importCodedDescriptions(org.jdom.Element elDataset,
                           org.jdom.Namespace sddNamespace,
                           SDDImportState cdmState)

importAgents

protected void importAgents(org.jdom.Element elDataset,
                org.jdom.Namespace sddNamespace,
                SDDImportState cdmState)

importPublications

protected void importPublications(org.jdom.Element elDataset,
                      org.jdom.Namespace sddNamespace,
                      SDDImportState cdmState)

importMediaObjects

protected void importMediaObjects(org.jdom.Element elDataset,
                      org.jdom.Namespace sddNamespace,
                      SDDImportState cdmState)

importDescriptiveConcepts

protected void importDescriptiveConcepts(org.jdom.Element elDataset,
                             org.jdom.Namespace sddNamespace,
                             SDDImportState cdmState)

importCharacterTrees

protected void importCharacterTrees(org.jdom.Element elDataset,
                        org.jdom.Namespace sddNamespace,
                        SDDImportState cdmState)

importTaxonHierarchies

protected void importTaxonHierarchies(org.jdom.Element elDataset,
                          org.jdom.Namespace sddNamespace,
                          SDDImportState cdmState)

importGeographicAreas

protected void importGeographicAreas(org.jdom.Element elDataset,
                         org.jdom.Namespace sddNamespace,
                         SDDImportState cdmState)