public abstract class SpecimenImportConfiguratorBase<CONFIG extends SpecimenImportConfiguratorBase,STATE extends SpecimenImportStateBase<CONFIG,STATE>,InputStream> extends ImportConfiguratorBase<STATE,InputStream>
IImportConfigurator.CHECK, IImportConfigurator.DO_REFERENCES, IImportConfigurator.EDITOR, IImportConfigurator.SOURCE_TYPE
Modifier and Type | Field and Description |
---|---|
protected java.util.Map<java.lang.String,java.util.UUID> |
namedAreaDecisions |
protected OccurenceQuery |
query |
ioBeans, ioClassList, ioList, sourceReference
authenticationToken, cdmApp, hibernateConfig, INCLUDE_UNPUBLISHED, NO_UNPUBLISHED
Constructor and Description |
---|
SpecimenImportConfiguratorBase(IInputTransformer transformer) |
Modifier and Type | Method and Description |
---|---|
void |
addMediaAsMediaSpecimen(boolean addMediaAsMediaSpecimen) |
java.lang.String |
getDefaultAuthor() |
java.util.UUID |
getNamedAreaDecision(java.lang.String areaStr) |
java.util.Map<java.lang.String,java.util.UUID> |
getNamedAreaDecisions() |
OccurenceQuery |
getOccurenceQuery() |
Person |
getPerson(java.lang.String titleCache) |
java.util.Map<java.lang.String,Person> |
getPersons() |
OccurenceQuery |
getQuery() |
java.net.URI |
getReportUri() |
java.lang.String |
getSourceReferenceTitle() |
SpecimenUserInteraction |
getSpecimenUserInteraction() |
java.lang.String |
getTaxonReference() |
java.util.Map<java.util.UUID,java.util.UUID> |
getTaxonToDescriptionMap() |
Team |
getTeam(java.lang.String titleCache) |
java.util.Map<java.lang.String,Team> |
getTeams() |
java.util.Map<java.lang.String,Person> |
getTitleCachePerson() |
java.util.Map<java.lang.String,Team> |
getTitleCacheTeam() |
SpecimenOrObservationType |
getType() |
boolean |
isAddIndividualsAssociationsSuchAsSpecimenAndObservations() |
boolean |
isAddMediaAsMediaSpecimen() |
boolean |
isAllowReuseOtherClassifications() |
boolean |
isDeduplicateClassifications() |
boolean |
isDeduplicateReferences() |
boolean |
isDownloadSequenceData() |
boolean |
isIgnoreAuthorship() |
boolean |
isIgnoreImportOfExistingSpecimen() |
boolean |
isMapUnitIdToAccessionNumber() |
boolean |
isMapUnitIdToBarcode() |
boolean |
isMapUnitIdToCatalogNumber() |
boolean |
isMoveNewTaxaToDefaultClassification() |
boolean |
isOverwriteExistingSpecimens() |
boolean |
isRemoveCountryFromLocalityText() |
boolean |
isReuseExistingDescriptiveGroups() |
boolean |
isReuseExistingMetaData() |
boolean |
isReuseExistingTaxaWhenPossible() |
boolean |
isValid() |
void |
putNamedAreaDecision(java.lang.String areaStr,
java.util.UUID uuid) |
void |
setAddIndividualsAssociationsSuchAsSpecimenAndObservations(boolean addIndividualsAssociationsSuchAsSpecimenAndObservations) |
void |
setAddMediaAsMediaSpecimen(boolean addMediaAsMediaSpecimen) |
void |
setAllowReuseOtherClassifications(boolean allowReuseOtherClassifications) |
void |
setDeduplicateClassifications(boolean deduplicateClassifications) |
void |
setDeduplicateReferences(boolean deduplicateReferences) |
void |
setDefaultAuthor(java.lang.String defaultAuthor) |
void |
setDownloadSequenceData(boolean downloadSequenceData) |
void |
setIgnoreAuthorship(boolean ignoreAuthorship) |
void |
setIgnoreImportOfExistingSpecimen(boolean ignoreImportOfExistingSpecimen) |
void |
setMapUnitIdToAccessionNumber(boolean mapUnitIdToAccessionNumber) |
void |
setMapUnitIdToBarcode(boolean mapUnitIdToBarcode) |
void |
setMapUnitIdToCatalogNumber(boolean mapUnitIdToCatalogNumber) |
void |
setMoveNewTaxaToDefaultClassification(boolean moveNewTaxaToDefaultClassification) |
void |
setNamedAreaDecisions(java.util.Map<java.lang.String,java.util.UUID> namedAreaDecisions) |
void |
setOccurenceQuery(OccurenceQuery query) |
void |
setOverwriteExistingSpecimens(boolean overwriteExistingSpecimens) |
void |
setPersons(java.util.Map<java.lang.String,Person> titleCachePerson) |
void |
setQuery(OccurenceQuery query) |
void |
setRemoveCountryFromLocalityText(boolean removeCountryFromLocalityText) |
void |
setReportUri(java.net.URI reportUri) |
void |
setReuseExistingDescriptiveGroups(boolean reuseExistingDescriptiveGroups) |
void |
setReuseExistingMetaData(boolean reuseExistingMetaData) |
void |
setReuseExistingTaxaWhenPossible(boolean reuseExistingTaxaWhenPossible) |
void |
setSourceReferenceTitle(java.lang.String name) |
void |
setTaxonReference(java.lang.String taxonReference) |
void |
setTeams(java.util.Map<java.lang.String,Team> titleCacheTeam) |
void |
setTitleCachePerson(java.util.Map<java.lang.String,Person> titleCachePerson) |
void |
setTitleCacheTeam(java.util.Map<java.lang.String,Team> titleCacheTeam) |
void |
setType(SpecimenOrObservationType type) |
getAuthenticationToken, getCheck, getClassificationName, getClassificationUuid, getCommentator, getDateString, getDefaultFunction, getDestination, getDestinationNameString, getEditor, getFeatureMap, getFeatureTreeTitle, getIoClassList, getNomenclaturalCode, getSecUuid, getSource, getSourceNameString, getSourceReference, getSourceRefUuid, getSourceSecId, getTransformer, getUuidFeatureTree, isCreateNew, isInteractWithUser, isOmitTermLoading, isRegisterAuditing, makeIoClassList, setCheck, setClassificationName, setClassificationUuid, setCommentator, setDestination, setEditor, setFeatureMap, setFeatureTreeTitle, setInteractWithUser, setIoClassList, setIoClassList, setNomenclaturalCode, setRegisterAuditing, setSecUuid, setSource, setSourceReference, setSourceRefUuid, setSourceSecId, setTransformer, setUuidFeatureTree
authenticateAsDefaultAdmin, getCdmAppController, getDbSchemaValidation, getHibernateConfig, getProgressMonitor, getUserFriendlyIOName, isUseClassification, setAuthentication, setAuthenticationToken, setCdmAppController, setDbSchemaValidation, setProgressMonitor, setUseClassification, setUserFriendlyIOName
addObserver, addObservers, countObservers, fire, fireWarningEvent, fireWarningEvent, getObservers, removeObserver, removeObservers, setObservers
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
getDbSchemaValidation, getNewState, setDbSchemaValidation
authenticateAsDefaultAdmin, getCdmAppController, getHibernateConfig, getObservers, getProgressMonitor, getUserFriendlyIOName, setAuthentication, setAuthenticationToken, setCdmAppController, setObservers, setProgressMonitor
addObserver, addObservers, countObservers, removeObserver, removeObservers
protected OccurenceQuery query
protected java.util.Map<java.lang.String,java.util.UUID> namedAreaDecisions
public SpecimenImportConfiguratorBase(IInputTransformer transformer)
transformer
- public SpecimenOrObservationType getType()
public void setType(SpecimenOrObservationType type)
type
- the type to setpublic boolean isIgnoreImportOfExistingSpecimen()
public void setIgnoreImportOfExistingSpecimen(boolean ignoreImportOfExistingSpecimen)
public java.util.Map<java.lang.String,Team> getTitleCacheTeam()
public void setTitleCacheTeam(java.util.Map<java.lang.String,Team> titleCacheTeam)
public java.util.Map<java.lang.String,Person> getTitleCachePerson()
public void setTitleCachePerson(java.util.Map<java.lang.String,Person> titleCachePerson)
public OccurenceQuery getQuery()
public void setQuery(OccurenceQuery query)
public java.lang.String getTaxonReference()
public void setTaxonReference(java.lang.String taxonReference)
public boolean isAddIndividualsAssociationsSuchAsSpecimenAndObservations()
public void setAddIndividualsAssociationsSuchAsSpecimenAndObservations(boolean addIndividualsAssociationsSuchAsSpecimenAndObservations)
public boolean isReuseExistingDescriptiveGroups()
public void setReuseExistingDescriptiveGroups(boolean reuseExistingDescriptiveGroups)
public java.lang.String getDefaultAuthor()
public void setDefaultAuthor(java.lang.String defaultAuthor)
public boolean isAllowReuseOtherClassifications()
public void setAllowReuseOtherClassifications(boolean allowReuseOtherClassifications)
public boolean isDeduplicateReferences()
public void setDeduplicateReferences(boolean deduplicateReferences)
public boolean isDeduplicateClassifications()
public void setDeduplicateClassifications(boolean deduplicateClassifications)
public boolean isMoveNewTaxaToDefaultClassification()
public void setMoveNewTaxaToDefaultClassification(boolean moveNewTaxaToDefaultClassification)
public boolean isMapUnitIdToCatalogNumber()
public void setMapUnitIdToCatalogNumber(boolean mapUnitIdToCatalogNumber)
public boolean isMapUnitIdToAccessionNumber()
public void setMapUnitIdToAccessionNumber(boolean mapUnitIdToAccessionNumber)
public boolean isMapUnitIdToBarcode()
public void setMapUnitIdToBarcode(boolean mapUnitIdToBarcode)
public java.util.Map<java.lang.String,java.util.UUID> getNamedAreaDecisions()
public void setNamedAreaDecisions(java.util.Map<java.lang.String,java.util.UUID> namedAreaDecisions)
public void putNamedAreaDecision(java.lang.String areaStr, java.util.UUID uuid)
public java.util.UUID getNamedAreaDecision(java.lang.String areaStr)
public java.util.Map<java.util.UUID,java.util.UUID> getTaxonToDescriptionMap()
public SpecimenUserInteraction getSpecimenUserInteraction()
public void setReuseExistingTaxaWhenPossible(boolean reuseExistingTaxaWhenPossible)
public void setIgnoreAuthorship(boolean ignoreAuthorship)
public void setRemoveCountryFromLocalityText(boolean removeCountryFromLocalityText)
public void setAddMediaAsMediaSpecimen(boolean addMediaAsMediaSpecimen)
public void setOverwriteExistingSpecimens(boolean overwriteExistingSpecimens)
public boolean isOverwriteExistingSpecimens()
public boolean isReuseExistingTaxaWhenPossible()
public void setTeams(java.util.Map<java.lang.String,Team> titleCacheTeam)
titleCacheTeam
- public Team getTeam(java.lang.String titleCache)
public java.util.Map<java.lang.String,Team> getTeams()
public void setPersons(java.util.Map<java.lang.String,Person> titleCachePerson)
titleCachePerson
- public java.util.Map<java.lang.String,Person> getPersons()
public Person getPerson(java.lang.String titleCache)
public boolean isAddMediaAsMediaSpecimen()
public void addMediaAsMediaSpecimen(boolean addMediaAsMediaSpecimen)
public boolean isIgnoreAuthorship()
public boolean isRemoveCountryFromLocalityText()
public OccurenceQuery getOccurenceQuery()
public void setOccurenceQuery(OccurenceQuery query)
public boolean isReuseExistingMetaData()
public void setReuseExistingMetaData(boolean reuseExistingMetaData)
reuseExistingMetaData
- the reuseExistingMetaData to setpublic void setReportUri(java.net.URI reportUri)
public java.net.URI getReportUri()
public java.lang.String getSourceReferenceTitle()
getSourceReferenceTitle
in interface IImportConfigurator
getSourceReferenceTitle
in class ImportConfiguratorBase<STATE extends SpecimenImportStateBase<CONFIG,STATE>,InputStream>
public void setSourceReferenceTitle(java.lang.String name)
setSourceReferenceTitle
in interface IImportConfigurator
setSourceReferenceTitle
in class ImportConfiguratorBase<STATE extends SpecimenImportStateBase<CONFIG,STATE>,InputStream>
public boolean isValid()
isValid
in interface IImportConfigurator
isValid
in class ImportConfiguratorBase<STATE extends SpecimenImportStateBase<CONFIG,STATE>,InputStream>
public boolean isDownloadSequenceData()
public void setDownloadSequenceData(boolean downloadSequenceData)
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