Package | Description |
---|---|
eu.etaxonomy.cdm.ext.openurl | |
eu.etaxonomy.cdm.io.cdm2cdm | |
eu.etaxonomy.cdm.model.agent |
Provides classes for different kinds of agents such as persons, teams or
institutions.
|
eu.etaxonomy.cdm.model.common |
Provides general technical or common classes on the base of which
are built the model classes of all others thematic packages.
|
eu.etaxonomy.cdm.model.description |
Provides classes:
to describe specimens, observations or taxa,
to associate other factual informations to specimens, observations or taxa (including distribution),
to supply additional information about taxon names and
to support identification by means of keys.
Related documentation
UML Diagrams |
eu.etaxonomy.cdm.model.media | |
eu.etaxonomy.cdm.model.molecular |
Provides classes for DNA samples and related sequences.
|
eu.etaxonomy.cdm.model.name |
Provides classes for nomenclature and typification.
|
eu.etaxonomy.cdm.model.occurrence |
Provides classes for specimens, collections and field units.
|
eu.etaxonomy.cdm.model.reference |
Provides classes for nomenclatural and bibliographical references
either as a complex structure of specific subclasses according to the different kind of possible references used (see StrictReferenceBase class and subclasses)
or as a flat structure (see BibTexReference class).
Related documentation
UML Diagrams |
eu.etaxonomy.cdm.model.taxon |
Provides classes for taxonomy including synonymy and concept synonymy.
|
Modifier and Type | Class and Description |
---|---|
class |
OpenUrlReference |
Modifier and Type | Method and Description |
---|---|
protected IIntextReferenceTarget |
Cdm2CdmImportBase.detache(IIntextReferenceTarget cdmBase,
boolean onlyForDefinedSignature) |
Modifier and Type | Method and Description |
---|---|
protected IIntextReferenceTarget |
Cdm2CdmImportBase.detache(IIntextReferenceTarget cdmBase,
boolean onlyForDefinedSignature) |
Modifier and Type | Class and Description |
---|---|
class |
AgentBase<S extends IIdentifiableEntityCacheStrategy<? extends AgentBase<S>>>
The upmost (abstract) class for agents such as persons, teams or institutions.
|
class |
Institution
This class represents public or private institutions.
|
class |
Person
This class represents human beings, living or dead.
It includes name parts, contact details, institutional membership ,
and other possible information such as life time period ,
taxonomic and/or geographical specialization . |
class |
Team
This class represents teams of
persons . |
class |
TeamOrPersonBase<T extends TeamOrPersonBase<T>>
The abstract class for such
agents (persons or teams ) who might also be used
for authorship of references or of taxon names . |
Modifier and Type | Class and Description |
---|---|
class |
IdentifiableSource
This class represents an
IOriginalSource
that can be used with identifiable entity . |
Modifier and Type | Method and Description |
---|---|
IIntextReferenceTarget |
IntextReference.getTarget()
Returns the target object.
|
Modifier and Type | Method and Description |
---|---|
static IntextReference |
IntextReferenceHelper.addIntextReference(IIntextReferenceTarget target,
IIntextReferencable referencedEntity,
int start,
int end) |
static IntextReference |
IntextReferenceHelper.addIntextReference(IIntextReferenceTarget target,
IIntextReferencable referencedEntity,
java.lang.String start,
java.lang.String inner,
java.lang.String end) |
IntextReference |
Annotation.addIntextReference(IIntextReferenceTarget target,
int start,
int end) |
IntextReference |
LanguageString.addIntextReference(IIntextReferenceTarget target,
int start,
int end) |
IntextReference |
IIntextReferencable.addIntextReference(IIntextReferenceTarget target,
int start,
int end)
Adds an
|
IntextReference |
Annotation.addIntextReference(IIntextReferenceTarget target,
java.lang.String start,
java.lang.String inner,
java.lang.String end) |
IntextReference |
LanguageString.addIntextReference(IIntextReferenceTarget target,
java.lang.String start,
java.lang.String inner,
java.lang.String end) |
IntextReference |
IIntextReferencable.addIntextReference(IIntextReferenceTarget target,
java.lang.String start,
java.lang.String inner,
java.lang.String end)
Adds an
IntextReference and
sets the text of the referenced entity.NOTE: this will override any existing text. |
static IntextReference |
IntextReference.NewInstance(IIntextReferenceTarget target,
IIntextReferencable referencedEntity,
int start,
int end) |
static LanguageString |
IntextReference.NewReferencedLanguageString(IIntextReferenceTarget target,
java.lang.String text,
int start,
int end,
Language language) |
static LanguageString |
IntextReference.NewReferencedLanguageString(IIntextReferenceTarget target,
java.lang.String pre,
java.lang.String middle,
java.lang.String post,
Language language) |
Modifier and Type | Class and Description |
---|---|
class |
DescriptionElementSource
This class represents an
IOriginalSource
that can be used with description elements . |
class |
MediaKey
The class representing single-access fixed dichotomous or polytomous authored
decision keys (as opposed to
multiple-access keys ) used to identify
specimens or observations (this means to assign taxa to). |
class |
PolytomousKey
This class represents a fixed single-access key (dichotomous or
polytomous) used to identify (assign a
taxon to) a specimen or observation . |
Modifier and Type | Class and Description |
---|---|
class |
Media
A
media is any kind of media that represents a media object. |
Modifier and Type | Class and Description |
---|---|
class |
DnaSample
A DNA Sample is the extracted DNA of a given tissue sample.
|
class |
PhylogeneticTree
"A phylogenetic tree or evolutionary tree is a branching diagram or "tree" showing the
inferred evolutionary relationships among various biological species or other entities
based upon similarities and differences in their physical and/or genetic characteristics.
|
Modifier and Type | Class and Description |
---|---|
class |
TaxonName
The upmost (abstract) class for scientific taxon names regardless of any
particular
nomenclature code . |
Modifier and Type | Class and Description |
---|---|
class |
DerivedUnit
A derived unit is regarded as derived from a field unit,
so locality and gathering related information is captured as a separate FieldUnit object
related to a specimen via a derivation event
http://www.bgbm.org/biodivinf/docs/CollectionModel/ReprintTNR.pdf
http://www.bgbm.org/biodivinf/docs/CollectionModel/
Type figures are derived units with at least a figure object in media |
class |
FieldUnit
In situ observation of a taxon in the field.
|
class |
MediaSpecimen
Instances of MediaSpecimen represent a specimen which IS a media (photo, drawing, ...).
|
class |
SpecimenOrObservationBase<S extends IIdentifiableEntityCacheStrategy<?>>
type figures are observations with at least a figure object in media
|
Modifier and Type | Class and Description |
---|---|
class |
OriginalSourceBase<T extends ISourceable>
Abstract base class for classes implementing
IOriginalSource . |
class |
Reference
The class for references (information sources).
|
Modifier and Type | Class and Description |
---|---|
class |
Synonym
|
class |
Taxon
|
class |
TaxonBase<S extends ITaxonCacheStrategy>
The upmost (abstract) class for the use of a
taxon name in a reference
or within a taxonomic view/treatment either as a taxon
("accepted" respectively "correct" name) or as a (junior) synonym . |
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