Modifier and Type | Method and Description |
---|---|
NamedArea |
DerivedUnitFacade.getCountry() |
Modifier and Type | Method and Description |
---|---|
java.util.Set<NamedArea> |
DerivedUnitFacade.getCollectingAreas() |
Modifier and Type | Method and Description |
---|---|
void |
DerivedUnitFacade.addCollectingArea(NamedArea area) |
void |
DerivedUnitFacade.removeCollectingArea(NamedArea area) |
void |
DerivedUnitFacade.setCountry(NamedArea country) |
Modifier and Type | Method and Description |
---|---|
void |
DerivedUnitFacade.addCollectingAreas(java.util.Collection<NamedArea> areas) |
Modifier and Type | Method and Description |
---|---|
NamedArea |
ITermService.getAreaByTdwgAbbreviation(java.lang.String tdwgAbbreviation) |
NamedArea |
TermServiceImpl.getAreaByTdwgAbbreviation(java.lang.String tdwgAbbreviation) |
Modifier and Type | Method and Description |
---|---|
TreeNode<java.util.Set<Distribution>,NamedArea> |
DistributionTree.findChildNode(TreeNode<java.util.Set<Distribution>,NamedArea> parentNode,
NamedArea nodeID)
Returns the (first) child node (of type TreeNode) with the given nodeID.
|
OrderedTermVocabulary<NamedArea> |
ILocationService.getNamedAreaVocabulary(ILocationService.NamedAreaVocabularyType vocabularyType)
Deprecated.
use TermService#getVocabulary(VocabularyType) instead
|
OrderedTermVocabulary<NamedArea> |
LocationServiceImpl.getNamedAreaVocabulary(ILocationService.NamedAreaVocabularyType vocabularyType) |
java.util.List<NamedArea> |
ILocationService.getTopLevelNamedAreasByVocabularyType(ILocationService.NamedAreaVocabularyType vocabularyType) |
java.util.List<NamedArea> |
LocationServiceImpl.getTopLevelNamedAreasByVocabularyType(ILocationService.NamedAreaVocabularyType vocabularyType) |
java.util.List<UuidAndTitleCache<NamedArea>> |
ITermService.getUuidAndTitleCacheNamedArea(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern,
Language lang) |
java.util.List<UuidAndTitleCache<NamedArea>> |
TermServiceImpl.getUuidAndTitleCacheNamedArea(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern,
Language lang) |
java.util.List<UuidAndTitleCache<NamedArea>> |
ITermService.getUuidAndTitleCacheNamedAreaByAbbrev(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern,
Language lang,
NamedAreaSearchField type)
Returns a list of
UuidAndTitleCache of named areas with IdInVocabulary matches search parameter |
java.util.List<UuidAndTitleCache<NamedArea>> |
TermServiceImpl.getUuidAndTitleCacheNamedAreaByAbbrev(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern,
Language lang,
NamedAreaSearchField type) |
Pager<NamedArea> |
ITermService.list(NamedAreaLevel level,
NamedAreaType type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a paged list of NamedArea instances (optionally filtered by type or level)
|
Pager<NamedArea> |
TermServiceImpl.list(NamedAreaLevel level,
NamedAreaType type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
TreeNode<java.util.Set<Distribution>,NamedArea> |
DistributionTree.findChildNode(TreeNode<java.util.Set<Distribution>,NamedArea> parentNode,
NamedArea nodeID)
Returns the (first) child node (of type TreeNode) with the given nodeID.
|
boolean |
DistributionTree.hasChildNode(TreeNode<java.util.Set<Distribution>,NamedArea> parentNode,
NamedArea nodeID) |
Modifier and Type | Method and Description |
---|---|
int |
DistributionNodeByAreaLabelComparator.compare(TreeNode<java.util.Set<Distribution>,NamedArea> node1,
TreeNode<java.util.Set<Distribution>,NamedArea> node2) |
int |
DistributionNodeByAreaLabelComparator.compare(TreeNode<java.util.Set<Distribution>,NamedArea> node1,
TreeNode<java.util.Set<Distribution>,NamedArea> node2) |
protected org.apache.lucene.search.Query |
TaxonServiceImpl.createByDistributionJoinQuery(java.util.List<NamedArea> namedAreaList,
java.util.List<PresenceAbsenceTerm> distributionStatusList,
QueryFactory queryFactory,
java.lang.Class<? extends CdmBase> toType,
boolean asFilter) |
Pager<SearchResult<TaxonBase>> |
TaxonServiceImpl.findByDistribution(java.util.List<NamedArea> areaFilter,
java.util.List<PresenceAbsenceTerm> statusFilter,
Classification classification,
TaxonNode subtree,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<SearchResult<TaxonBase>> |
ITaxonService.findByDistribution(java.util.List<NamedArea> areaFilter,
java.util.List<PresenceAbsenceTerm> statusFilter,
Classification classification,
TaxonNode subtree,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
TreeNode<java.util.Set<Distribution>,NamedArea> |
DistributionTree.findChildNode(TreeNode<java.util.Set<Distribution>,NamedArea> parentNode,
NamedArea nodeID)
Returns the (first) child node (of type TreeNode) with the given nodeID.
|
Pager<SearchResult<TaxonBase>> |
TaxonServiceImpl.findTaxaAndNamesByFullText(java.util.EnumSet<TaxaAndNamesSearchMode> searchModes,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
java.util.Set<NamedArea> namedAreas,
java.util.Set<PresenceAbsenceTerm> distributionStatus,
java.util.List<Language> languages,
boolean highlightFragments,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<SearchResult<TaxonBase>> |
ITaxonService.findTaxaAndNamesByFullText(java.util.EnumSet<TaxaAndNamesSearchMode> searchModes,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
java.util.Set<NamedArea> namedAreas,
java.util.Set<PresenceAbsenceTerm> distributionStatus,
java.util.List<Language> languages,
boolean highlightFragments,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Searches for TaxonBase instances using the TaxonBase free text index.
|
Pager<MediaKey> |
MediaServiceImpl.getMediaKeys(java.util.Set<Taxon> taxonomicScope,
java.util.Set<NamedArea> geoScopes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<MediaKey> |
IMediaService.getMediaKeys(java.util.Set<Taxon> taxonomicScope,
java.util.Set<NamedArea> geoScopes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Return a List of MediaKeys, optionally filtered by the parameters passed.
|
boolean |
DistributionTree.hasChildNode(TreeNode<java.util.Set<Distribution>,NamedArea> parentNode,
NamedArea nodeID) |
java.util.List<TaxonDescription> |
IDescriptionService.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionServiceImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
IDescriptionService.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionServiceImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonDescription> |
IDescriptionService.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
Pager<TaxonDescription> |
DescriptionServiceImpl.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonDescription> |
IDescriptionService.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
Pager<TaxonDescription> |
DescriptionServiceImpl.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
protected LuceneSearch |
TaxonServiceImpl.prepareByDistributionSearch(java.util.List<NamedArea> namedAreaList,
java.util.List<PresenceAbsenceTerm> distributionStatusList,
Classification classification,
TaxonNode subtree)
This method has been primarily created for testing the area join query but might
also be useful in other situations
|
Pager<TaxonDescription> |
IDescriptionService.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
Pager<TaxonDescription> |
DescriptionServiceImpl.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
FIXME Candidate for harmonization
Rename: searchByDistribution
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<NamedArea> |
FindTaxaAndNamesConfiguratorImpl.getNamedAreas() |
java.util.Set<NamedArea> |
IFindTaxaAndNamesConfigurator.getNamedAreas() |
Modifier and Type | Method and Description |
---|---|
void |
FindTaxaAndNamesConfiguratorImpl.setNamedAreas(java.util.Set<NamedArea> namedAreas) |
void |
IFindTaxaAndNamesConfigurator.setNamedAreas(java.util.Set<NamedArea> areas) |
Modifier and Type | Method and Description |
---|---|
NamedArea |
SpecimenRowWrapperDTO.getCountry() |
Constructor and Description |
---|
SpecimenRowWrapperDTO(SpecimenDescription description,
TaxonNodeDto taxonNode,
FieldUnit fieldUnit,
java.lang.String identifier,
NamedArea country) |
Modifier and Type | Method and Description |
---|---|
java.util.Comparator<TreeNode<java.util.Set<Distribution>,NamedArea>> |
DistributionOrder.getComparator()
Returns a comparator that implements the given distribution order.
|
Modifier and Type | Method and Description |
---|---|
static boolean |
DescriptionUtility.checkAreaMarkedHidden(java.util.Set<MarkerType> hiddenAreaMarkerTypes,
NamedArea area) |
Modifier and Type | Method and Description |
---|---|
int |
DistributionNodeByAreaOrderComparator.compare(TreeNode<java.util.Set<Distribution>,NamedArea> node1,
TreeNode<java.util.Set<Distribution>,NamedArea> node2) |
int |
DistributionNodeByAreaOrderComparator.compare(TreeNode<java.util.Set<Distribution>,NamedArea> node1,
TreeNode<java.util.Set<Distribution>,NamedArea> node2) |
Modifier and Type | Field and Description |
---|---|
protected NamedArea |
CondensedDistributionComposerBase.AreaNode.area |
Modifier and Type | Method and Description |
---|---|
protected NamedArea |
CondensedDistributionComposerBase.findParentIn(NamedArea area,
java.util.Collection<NamedArea> areas)
Searches for the parent are of the area given as parameter in
the Collection of areas.
|
Modifier and Type | Method and Description |
---|---|
java.util.Collection<NamedArea> |
CondensedDistributionComposerBase.AreaNode.getSubareas() |
java.util.Map<NamedArea,java.lang.String> |
EditGeoService.mapShapeFileToNamedAreas(java.io.Reader csvReader,
java.util.List<java.lang.String> idSearchFields,
java.lang.String wmsLayerName,
java.util.UUID areaVocabularyUuid,
java.util.Set<java.util.UUID> namedAreaUuids) |
java.util.Map<NamedArea,java.lang.String> |
IEditGeoService.mapShapeFileToNamedAreas(java.io.Reader csvReader,
java.util.List<java.lang.String> idSearchFields,
java.lang.String wmsLayerName,
java.util.UUID areaVocabularyUuid,
java.util.Set<java.util.UUID> namedAreaUuids)
Reads csv data containing the attributes from a shape file and adds the
shapefile data to each area in the given set of
NamedAreas . |
java.util.Map<NamedArea,java.lang.String> |
ShpAttributesToNamedAreaMapper.readCsv(java.io.Reader reader,
java.util.List<java.lang.String> idSearchFields,
java.lang.String wmsLayerName) |
Modifier and Type | Method and Description |
---|---|
void |
GeoServiceAreaAnnotatedMapping.clear(NamedArea area) |
void |
IGeoServiceAreaMapping.clear(NamedArea area)
Clear the mapping for the given NamedArea
|
protected NamedArea |
CondensedDistributionComposerBase.findParentIn(NamedArea area,
java.util.Collection<NamedArea> areas)
Searches for the parent are of the area given as parameter in
the Collection of areas.
|
protected java.lang.String |
CondensedDistributionComposerBase.makeAreaLabel(java.util.List<Language> langs,
NamedArea area) |
void |
GeoServiceAreaAnnotatedMapping.set(NamedArea area,
GeoServiceArea geoServiceArea) |
void |
IGeoServiceAreaMapping.set(NamedArea area,
GeoServiceArea geoServiceArea)
Set the mapping.
|
void |
EditGeoService.setMapping(NamedArea area,
GeoServiceArea geoServiceArea) |
void |
IEditGeoService.setMapping(NamedArea area,
GeoServiceArea geoServiceArea)
Adds an area mapping (CDM area -> geo service area).
|
GeoServiceArea |
GeoServiceAreaAnnotatedMapping.valueOf(NamedArea area) |
GeoServiceArea |
IGeoServiceAreaMapping.valueOf(NamedArea area)
Transforms a CDM area to an geoservice area
|
Modifier and Type | Method and Description |
---|---|
protected NamedArea |
CondensedDistributionComposerBase.findParentIn(NamedArea area,
java.util.Collection<NamedArea> areas)
Searches for the parent are of the area given as parameter in
the Collection of areas.
|
Constructor and Description |
---|
AreaNode(NamedArea area) |
Constructor and Description |
---|
ShpAttributesToNamedAreaMapper(java.util.Set<NamedArea> areas,
IGeoServiceAreaMapping areaMapping) |
ShpAttributesToNamedAreaMapper(TermVocabulary<NamedArea> areaVocabulary,
IGeoServiceAreaMapping areaMapping) |
Modifier and Type | Method and Description |
---|---|
java.util.List<LogicFilter<NamedArea>> |
TaxonNodeFilter.getAreaFilter() |
Modifier and Type | Method and Description |
---|---|
TaxonNodeFilter |
TaxonNodeFilter.orArea(NamedArea area) |
Constructor and Description |
---|
TaxonNodeFilter(NamedArea area) |
Modifier and Type | Method and Description |
---|---|
protected NamedArea |
Cdm2CdmImportBase.handlePersistedNamedArea(NamedArea area) |
Modifier and Type | Method and Description |
---|---|
protected NamedArea |
Cdm2CdmImportBase.handlePersistedNamedArea(NamedArea area) |
Modifier and Type | Method and Description |
---|---|
static NamedArea |
TdwgAreaProvider.getAreaByTdwgAbbreviation(java.lang.String tdwgAbbreviation)
Deprecated.
|
static NamedArea |
TdwgAreaProvider.getAreaByTdwgLabel(java.lang.String tdwgLabel)
Deprecated.
|
protected NamedArea |
CdmImportBase.getNamedArea(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
NamedAreaType areaType,
NamedAreaLevel level)
Returns a named area for a given uuid by first .
|
protected NamedArea |
CdmImportBase.getNamedArea(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
NamedAreaType areaType,
NamedAreaLevel level,
TermVocabulary<?> voc,
CdmImportBase.TermMatchMode matchMode) |
protected NamedArea |
CdmImportBase.getNamedArea(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
NamedAreaType areaType,
NamedAreaLevel level,
TermVocabulary voc,
CdmImportBase.TermMatchMode matchMode,
java.util.List<TermVocabulary<NamedArea>> vocabularyPreference) |
NamedArea |
ImportStateBase.getNamedArea(java.util.UUID uuid) |
Modifier and Type | Method and Description |
---|---|
void |
ImportStateBase.putNamedArea(NamedArea namedArea) |
Modifier and Type | Method and Description |
---|---|
protected NamedArea |
CdmImportBase.getNamedArea(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
NamedAreaType areaType,
NamedAreaLevel level,
TermVocabulary voc,
CdmImportBase.TermMatchMode matchMode,
java.util.List<TermVocabulary<NamedArea>> vocabularyPreference) |
Modifier and Type | Method and Description |
---|---|
NamedArea |
InputTransformerBase.getNamedAreaByKey(java.lang.String key) |
NamedArea |
IInputTransformer.getNamedAreaByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
java.lang.String |
ExportTransformerBase.getCacheByNamedArea(NamedArea area) |
java.lang.String |
IExportTransformer.getCacheByNamedArea(NamedArea area) |
java.lang.Object |
ExportTransformerBase.getKeyByNamedArea(NamedArea area) |
java.lang.Object |
IExportTransformer.getKeyByNamedArea(NamedArea area) |
Modifier and Type | Method and Description |
---|---|
java.util.List<NamedArea> |
CsvDemoExportConfigurator.getNamedAreas() |
Modifier and Type | Method and Description |
---|---|
protected void |
CsvDemoBase.handleArea(ICsvAreaRecord record,
NamedArea area,
TaxonBase<?> taxon,
boolean required)
Creates the locationId, locality, countryCode triple
|
void |
ICsvAreaRecord.setLocationId(NamedArea cdmBase) |
Modifier and Type | Method and Description |
---|---|
void |
CsvDemoExportConfigurator.setNamedAreas(java.util.List<NamedArea> areas) |
Modifier and Type | Method and Description |
---|---|
java.util.List<NamedArea> |
CsvTaxExportConfiguratorRedlist.getNamedAreas() |
Modifier and Type | Method and Description |
---|---|
protected void |
CsvExportBaseRedlist.handleArea(ICsvAreaRecord record,
NamedArea area,
TaxonBase<?> taxon,
boolean required)
Creates the locationId, locality, countryCode triple
|
void |
ICsvAreaRecord.setLocationId(NamedArea cdmBase) |
Modifier and Type | Method and Description |
---|---|
protected java.util.List<TaxonNode> |
CsvTaxExportRedlist.handleGeographicalFilter(CsvTaxExportStateRedlist state,
java.util.List<NamedArea> selectedAreas,
java.util.Set<TaxonNode> taxonNodes)
|
void |
CsvTaxExportConfiguratorRedlist.setNamedAreas(java.util.List<NamedArea> areas) |
Modifier and Type | Method and Description |
---|---|
NamedArea |
DwcaImportTransformer.getNamedAreaByKey(java.lang.String key) |
protected NamedArea |
GbifDistributionCsv2CdmConverter.getTdwgArea(java.lang.String locationId) |
Modifier and Type | Method and Description |
---|---|
protected void |
DwcaDataExportBase.handleArea(DwcaTaxExportState state,
IDwcaAreaRecord record,
NamedArea area,
TaxonBase<?> taxon,
boolean required)
Creates the locationId, locality, countryCode triple
|
void |
DwcaVernacularRecord.setLocationId(NamedArea locationId) |
void |
DwcaDistributionRecord.setLocationId(NamedArea area) |
void |
IDwcaAreaRecord.setLocationId(NamedArea cdmBase) |
Modifier and Type | Method and Description |
---|---|
protected NamedArea |
MarkupImportBase.getNamedArea(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
NamedAreaType areaType,
NamedAreaLevel level,
TermVocabulary voc,
CdmImportBase.TermMatchMode matchMode) |
NamedArea |
MarkupDocumentImport.getNamedArea(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
NamedAreaType areaType,
NamedAreaLevel level,
TermVocabulary voc,
CdmImportBase.TermMatchMode matchMode) |
NamedArea |
MarkupTransformer.getNamedAreaByKey(java.lang.String key) |
protected NamedArea |
MarkupImportBase.makeArea(MarkupImportState state,
java.lang.String areaName,
NamedAreaLevel level) |
Modifier and Type | Method and Description |
---|---|
java.util.Set<NamedArea> |
MarkupImportState.getCurrentAreas() |
Modifier and Type | Method and Description |
---|---|
void |
MarkupImportState.addCurrentArea(NamedArea area) |
Modifier and Type | Method and Description |
---|---|
NamedArea |
StreamImportBase.getNamedArea(STATE state,
java.util.UUID namedAreaUuid,
java.lang.String label,
java.lang.String description,
java.lang.String abbrevLabel,
TermVocabulary voc) |
Modifier and Type | Method and Description |
---|---|
int |
AlphabeticallyAscendingNamedAreaComparator.compare(NamedArea o1,
NamedArea o2) |
Modifier and Type | Method and Description |
---|---|
NamedArea |
Distribution.getArea()
Returns the
named area this distribution applies to. |
NamedArea |
CommonTaxonName.getArea()
The area where the name is used
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<NamedArea> |
DescriptiveDataSet.getGeoFilter() |
java.util.Set<NamedArea> |
MediaKey.getGeographicalScope()
Returns the set of
named areas indicating the geospatial
data where this identification key is valid. |
java.util.Set<NamedArea> |
MultiAccessKey.getGeographicalScope()
Returns the set of
named areas indicating the geospatial
data where this identification key is valid. |
java.util.Set<NamedArea> |
IIdentificationKey.getGeographicalScope()
The geographic scope of the key.
|
java.util.Set<NamedArea> |
PolytomousKey.getGeographicalScope()
Returns the set of
named areas indicating the
geospatial data where this identification key is valid. |
java.util.Set<NamedArea> |
TaxonDescription.getGeoScopes()
Returns the set of
named areas indicating the geospatial
data where this taxon description is valid. |
Modifier and Type | Method and Description |
---|---|
void |
DescriptiveDataSet.addGeoFilterArea(NamedArea area) |
void |
MediaKey.addGeographicalScope(NamedArea geoScope)
Adds a
geoScope to the set of geogspatial scopes
corresponding to this identification key. |
void |
MultiAccessKey.addGeographicalScope(NamedArea geoScope)
Adds a
geoScope to the set of geogspatial scopes
corresponding to this identification key. |
void |
IIdentificationKey.addGeographicalScope(NamedArea geographicalScope) |
void |
PolytomousKey.addGeographicalScope(NamedArea geoScope)
Adds a
geoScope to the set of geogspatial scopes corresponding to this identification key. |
void |
TaxonDescription.addGeoScope(NamedArea geoScope)
Adds a
named area to the set of named areas
delimiting the geospatial area where this taxon description is valid. |
static Distribution |
Distribution.NewInstance(NamedArea area,
PresenceAbsenceTerm status)
Creates a distribution instance with the given
named area and status . |
static CommonTaxonName |
CommonTaxonName.NewInstance(java.lang.String name,
Language language,
NamedArea area)
Creates a common name instance with the given name string and the given
language . |
boolean |
DescriptiveDataSet.removeGeoFilterArea(NamedArea area) |
void |
MediaKey.removeGeographicalScope(NamedArea geoScope)
Removes one element from the set of
geogspatial scopes
corresponding to this identification key. |
void |
MultiAccessKey.removeGeographicalScope(NamedArea geoScope)
Removes one element from the set of
geogspatial scopes
corresponding to this identification key. |
void |
IIdentificationKey.removeGeographicalScope(NamedArea geographicalScope) |
void |
PolytomousKey.removeGeographicalScope(NamedArea geoScope)
Removes one element from the set of
geogspatial
scopes corresponding to this identification key. |
void |
TaxonDescription.removeGeoScope(NamedArea geoScope)
Removes one element from the set of
named areas delimiting
the geospatial area where this taxon description is valid. |
void |
Distribution.setArea(NamedArea area) |
void |
CommonTaxonName.setArea(NamedArea area) |
Modifier and Type | Method and Description |
---|---|
void |
DescriptiveDataSet.setGeoFilter(java.util.Set<NamedArea> geoFilter) |
Modifier and Type | Class and Description |
---|---|
class |
Country
+/- current ISO codes.
|
Modifier and Type | Field and Description |
---|---|
protected static java.util.Map<java.util.UUID,NamedArea> |
Country.termMap |
Modifier and Type | Method and Description |
---|---|
static NamedArea |
NamedArea.AFRICA() |
static NamedArea |
NamedArea.ANTARCTICA() |
static NamedArea |
NamedArea.ARCTICOCEAN() |
static NamedArea |
NamedArea.ASIA_TEMPERATE() |
static NamedArea |
NamedArea.ASIA_TROPICAL() |
static NamedArea |
NamedArea.ATLANTICOCEAN() |
static NamedArea |
NamedArea.AUSTRALASIA() |
static NamedArea |
NamedArea.BLACKSEA() |
static NamedArea |
NamedArea.CASPIANSEA() |
static NamedArea |
NamedArea.EUROPE() |
static NamedArea |
NamedArea.getAreaByTdwgAbbreviation(java.lang.String tdwgAbbreviation)
Deprecated.
|
static NamedArea |
NamedArea.getAreaByTdwgLabel(java.lang.String tdwgLabel)
Deprecated.
|
protected static NamedArea |
NamedArea.getContinentByUuid(java.util.UUID uuid)
Deprecated.
|
NamedArea |
NamedArea.getKindOf() |
NamedArea |
NamedArea.getPartOf() |
NamedArea |
NamedArea.getPartOfWorkaround()
Deprecated.
|
protected static NamedArea |
NamedArea.getTdwgTermByUuid(java.util.UUID uuid)
Deprecated.
|
protected static NamedArea |
NamedArea.getWaterbodyByUuid(java.util.UUID uuid)
Deprecated.
|
static NamedArea |
NamedArea.INDIANOCEAN() |
static NamedArea |
NamedArea.MEDITERRANEANSEA() |
static NamedArea |
NamedArea.NewInstance()
Factory method
|
static NamedArea |
NamedArea.NewInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev)
Factory method
|
static NamedArea |
NamedArea.NORTH_AMERICA() |
static NamedArea |
NamedArea.PACIFIC() |
static NamedArea |
NamedArea.PACIFICOCEAN() |
static NamedArea |
NamedArea.PERSIANGULF() |
NamedArea |
Country.readCsvLine(java.lang.Class<NamedArea> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId) |
NamedArea |
NamedArea.readCsvLine(java.lang.Class<NamedArea> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId) |
static NamedArea |
NamedArea.REDSEA() |
static NamedArea |
NamedArea.SOUTH_AMERICA() |
static NamedArea |
NamedArea.SOUTHERNOCEAN() |
Modifier and Type | Method and Description |
---|---|
java.util.List<NamedArea> |
NamedArea.getAllLevelList() |
java.util.Set<NamedArea> |
Country.getContinents() |
java.util.Set<NamedArea> |
NamedArea.getGeneralizationOf() |
java.util.Set<NamedArea> |
NamedArea.getIncludes() |
Modifier and Type | Method and Description |
---|---|
NamedArea.NamedAreaNode |
NamedArea.LevelNode.add(NamedArea area) |
void |
Country.addContinent(NamedArea continent) |
protected static void |
NamedArea.addTdwgArea(NamedArea area) |
NamedArea.NamedAreaNode |
NamedArea.LevelNode.getNamedAreaNode(NamedArea area) |
static java.lang.String |
NamedArea.labelWithLevel(NamedArea namedArea,
Language language)
Returns the label of the named area together with the area level label and the abbreviated label.
|
void |
Country.removeContinent(NamedArea continent) |
void |
NamedArea.setKindOf(NamedArea kindOf) |
void |
NamedArea.setPartOf(NamedArea partOf) |
Modifier and Type | Method and Description |
---|---|
static NamedArea.NamedAreaNode |
NamedArea.getHiearchieList(java.util.List<NamedArea> areaList)
This method returns a sorted tree structure which sorts areas by it's level and within the same level
alphabetically (TODO to be tested).
|
NamedArea |
Country.readCsvLine(java.lang.Class<NamedArea> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId) |
NamedArea |
NamedArea.readCsvLine(java.lang.Class<NamedArea> termClass,
java.util.List<java.lang.String> csvLine,
TermType termType,
java.util.Map<java.util.UUID,DefinedTermBase> terms,
boolean abbrevAsId) |
protected void |
NamedArea.setDefaultContinentTerms(TermVocabulary<NamedArea> termVocabulary) |
protected void |
Country.setDefaultTerms(TermVocabulary<NamedArea> termVocabulary) |
protected void |
NamedArea.setDefaultTerms(TermVocabulary<NamedArea> termVocabulary) |
protected void |
NamedArea.setDefaultWaterbodyTerms(TermVocabulary<NamedArea> termVocabulary) |
protected void |
NamedArea.setGeneralizationOf(java.util.Set<NamedArea> value) |
protected void |
NamedArea.setIncludes(java.util.Set<NamedArea> includes) |
protected void |
NamedArea.setTdwgDefaultTerms(TermVocabulary<NamedArea> tdwgTermVocabulary) |
Modifier and Type | Method and Description |
---|---|
NamedArea |
GatheringEvent.getCountry() |
Modifier and Type | Method and Description |
---|---|
java.util.Set<NamedArea> |
GatheringEvent.getCollectingAreas()
Further collecting areas.
|
Modifier and Type | Method and Description |
---|---|
void |
GatheringEvent.addCollectingArea(NamedArea area)
Further collecting areas.
|
void |
GatheringEvent.removeCollectingArea(NamedArea area) |
void |
GatheringEvent.setCountry(NamedArea country) |
Modifier and Type | Method and Description |
---|---|
java.util.Set<NamedArea> |
Classification.getGeoScopes()
Returns the set of
named areas indicating the geospatial
data where this Classification is valid. |
Modifier and Type | Method and Description |
---|---|
void |
Classification.addGeoScope(NamedArea geoScope)
Adds a
named area to the set of named areas
delimiting the geospatial area where this Classification is valid. |
void |
Classification.removeGeoScope(NamedArea geoScope)
Removes one element from the set of
named areas delimiting
the geospatial area where this Classification is valid. |
Modifier and Type | Method and Description |
---|---|
long |
IDescriptionDao.countDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence)
Returns a count of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
long |
IDescriptionDao.countTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerType,
java.util.Set<DescriptionType> descriptionTypes)
Returns a count of TaxonDescription instances, optionally filtered by parameters passed to this method
|
java.util.List<TaxonDescription> |
IDescriptionDao.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
java.util.List<TaxonDescription> |
IDescriptionDao.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm presence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a List of distinct TaxonDescription instances which have Distribution elements that refer to one of the NamedArea instances passed (optionally
filtered by a type of PresenceAbsenceTerm e.g.
|
Modifier and Type | Method and Description |
---|---|
long |
DescriptionDaoImpl.countDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm status) |
long |
DescriptionDaoImpl.countTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScopes,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes) |
java.util.List<TaxonDescription> |
DescriptionDaoImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScopes,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionDaoImpl.searchDescriptionByDistribution(java.util.Set<NamedArea> namedAreas,
PresenceAbsenceTerm status,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
long |
MediaDaoHibernateImpl.countMediaKeys(java.util.Set<Taxon> taxonomicScope,
java.util.Set<NamedArea> geoScopes) |
java.util.List<MediaKey> |
MediaDaoHibernateImpl.getMediaKeys(java.util.Set<Taxon> taxonomicScope,
java.util.Set<NamedArea> geoScopes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
long |
TaxonDaoHibernateImpl.countTaxaByCommonName(java.lang.String searchString,
Classification classification,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas) |
long |
TaxonDaoHibernateImpl.countTaxaByName(boolean doTaxa,
boolean doSynonyms,
boolean doMisappliedNames,
boolean doCommonNames,
boolean doIncludeAuthors,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
boolean includeUnpublished) |
java.util.List<TaxonBase> |
TaxonDaoHibernateImpl.findByNameTitleCache(boolean doTaxa,
boolean doSynonyms,
boolean includeUnpublished,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
NameSearchOrder order,
java.lang.Integer pageNumber,
java.lang.Integer pageSize,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<Taxon> |
TaxonDaoHibernateImpl.getTaxaByCommonName(java.lang.String queryString,
Classification classification,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<UuidAndTitleCache<Taxon>> |
TaxonDaoHibernateImpl.getTaxaByCommonNameForEditor(java.lang.String titleSearchStringSqlized,
Classification classification,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas) |
java.util.List<TaxonBase> |
TaxonDaoHibernateImpl.getTaxaByName(boolean doTaxa,
boolean doSynonyms,
boolean doMisappliedNames,
boolean doCommonNames,
boolean includeAuthors,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
boolean includeUnpublished,
NameSearchOrder order,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<UuidAndTitleCache<? extends IdentifiableEntity>> |
TaxonDaoHibernateImpl.getTaxaByNameForEditor(boolean doTaxa,
boolean doSynonyms,
boolean doNamesWithoutTaxa,
boolean doMisappliedNames,
boolean doCommonNames,
boolean includeUnpublished,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
NameSearchOrder order) |
Modifier and Type | Method and Description |
---|---|
java.util.List<NamedArea> |
DefinedTermDaoImpl.list(NamedAreaLevel level,
NamedAreaType type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber) |
java.util.List<NamedArea> |
DefinedTermDaoImpl.list(NamedAreaLevel level,
NamedAreaType type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<NamedArea> |
DefinedTermDaoImpl.listNamedArea(java.util.List<TermVocabulary> vocs,
java.lang.Integer pageNumber,
java.lang.Integer limit,
java.lang.String pattern,
MatchMode matchmode) |
java.util.List<NamedArea> |
DefinedTermDaoImpl.listNamedArea(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern) |
java.util.List<NamedArea> |
DefinedTermDaoImpl.listNamedAreaByAbbrev(java.util.List<TermVocabulary> vocs,
java.lang.Integer pageNumber,
java.lang.Integer limit,
java.lang.String pattern,
MatchMode matchmode,
NamedAreaSearchField abbrevType) |
java.util.List<NamedArea> |
DefinedTermDaoImpl.listNamedAreaByAbbrev(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern,
NamedAreaSearchField type) |
Modifier and Type | Method and Description |
---|---|
long |
IMediaDao.countMediaKeys(java.util.Set<Taxon> taxonomicScope,
java.util.Set<NamedArea> geoScopes)
Return a count of MediaKeys, optionally filtered by the parameters passed.
|
java.util.List<MediaKey> |
IMediaDao.getMediaKeys(java.util.Set<Taxon> taxonomicScope,
java.util.Set<NamedArea> geoScopes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Return a List of MediaKeys, optionally filtered by the parameters passed.
|
Modifier and Type | Method and Description |
---|---|
long |
ITaxonDao.countTaxaByCommonName(java.lang.String searchString,
Classification classification,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas) |
long |
ITaxonDao.countTaxaByName(boolean doTaxa,
boolean doSynonyms,
boolean doMisappliedNames,
boolean doCommonNames,
boolean doIncludeAuthors,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
boolean includeUnpublished) |
java.util.List<TaxonBase> |
ITaxonDao.findByNameTitleCache(boolean doTaxa,
boolean doSynonyms,
boolean includeUnpublished,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
NameSearchOrder order,
java.lang.Integer pageNumber,
java.lang.Integer pageSize,
java.util.List<java.lang.String> propertyPaths)
Find taxa by searching for Taxa and Synonyms where the
TaxonName .titleCache matches
the name specified as queryString taxonName |
java.util.List<Taxon> |
ITaxonDao.getTaxaByCommonName(java.lang.String queryString,
Classification classification,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<UuidAndTitleCache<Taxon>> |
ITaxonDao.getTaxaByCommonNameForEditor(java.lang.String titleSearchStringSqlized,
Classification classification,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas) |
java.util.List<TaxonBase> |
ITaxonDao.getTaxaByName(boolean doTaxa,
boolean doSynonyms,
boolean doMisappliedNames,
boolean doCommonNames,
boolean includeAuthors,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
boolean includeUnpublished,
NameSearchOrder order,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a list of TaxonBase instances (or Taxon instances, if accepted == true, or Synonym instance, if accepted == false)
where the taxonBase.name.nameCache property matches the String queryString.
|
java.util.List<UuidAndTitleCache<? extends IdentifiableEntity>> |
ITaxonDao.getTaxaByNameForEditor(boolean doTaxa,
boolean doSynonyms,
boolean doNamesWithoutTaxa,
boolean doMisappliedNames,
boolean doCommonNames,
boolean includeUnpublished,
java.lang.String queryString,
Classification classification,
TaxonNode subtree,
MatchMode matchMode,
java.util.Set<NamedArea> namedAreas,
NameSearchOrder order) |
Modifier and Type | Method and Description |
---|---|
java.util.List<NamedArea> |
IDefinedTermDao.list(NamedAreaLevel level,
NamedAreaType type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber)
Returns a List of NamedArea instances (optionally filtered by type or level)
|
java.util.List<NamedArea> |
IDefinedTermDao.list(NamedAreaLevel level,
NamedAreaType type,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<NamedArea> |
IDefinedTermDao.listNamedArea(java.util.List<TermVocabulary> vocs,
java.lang.Integer pageNumber,
java.lang.Integer limit,
java.lang.String pattern,
MatchMode matchMode) |
java.util.List<NamedArea> |
IDefinedTermDao.listNamedArea(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern) |
java.util.List<NamedArea> |
IDefinedTermDao.listNamedAreaByAbbrev(java.util.List<TermVocabulary> vocs,
java.lang.Integer pageNumber,
java.lang.Integer limit,
java.lang.String pattern,
MatchMode matchmode,
NamedAreaSearchField type) |
java.util.List<NamedArea> |
IDefinedTermDao.listNamedAreaByAbbrev(java.util.List<TermVocabulary> vocs,
java.lang.Integer limit,
java.lang.String pattern,
NamedAreaSearchField type) |
Modifier and Type | Method and Description |
---|---|
Pager<IdentifiableEntity> |
TaxonListController.doFind(java.lang.String query,
java.util.UUID classificationUuid,
java.util.UUID subtreeUuid,
java.util.Set<NamedArea> areas,
java.lang.Integer pageNumber,
java.lang.Integer pageSize,
java.lang.Boolean doTaxa,
java.lang.Boolean doSynonyms,
java.lang.Boolean doMisappliedNames,
java.lang.Boolean doTaxaByCommonNames,
MatchMode matchMode,
NameSearchOrder order,
java.lang.Boolean includeAuthors,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
Find Taxa, Synonyms, Common Names by name, either globally or in a specific geographic area.
|
Pager<SearchResult<TaxonBase>> |
TaxonListController.doSearch(java.lang.String query,
java.util.UUID classificationUuid,
java.util.UUID subtreeUuid,
DefinedTermBaseList<NamedArea> areaList,
PresenceAbsenceTerm[] status,
java.lang.Integer pageNumber,
java.lang.Integer pageSize,
java.lang.Boolean doTaxa,
java.lang.Boolean doSynonyms,
java.lang.Boolean doMisappliedNames,
java.lang.Boolean doTaxaByCommonNames,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
Find Taxa, Synonyms, Common Names by name, either globally or in a specific geographic area.
|
static void |
TaxonListController.includeAllSubAreas(java.util.Set<NamedArea> areaSet,
ITermService termService) |
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