Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
DerivedUnitFacade.getDerivedUnitMedia()
Returns the media for the specimen.
|
java.util.List<Media> |
DerivedUnitFacade.getFieldObjectMedia()
Returns the media for the field object.
|
Modifier and Type | Method and Description |
---|---|
boolean |
DerivedUnitFacade.addDerivedUnitMedia(Media media) |
boolean |
DerivedUnitFacade.addFieldObjectMedia(Media media) |
boolean |
DerivedUnitFacade.removeDerivedUnitMedia(Media media) |
boolean |
DerivedUnitFacade.removeFieldObjectMedia(Media media) |
Modifier and Type | Method and Description |
---|---|
Pager<Media> |
ITermService.getMedia(DefinedTermBase definedTerm,
java.lang.Integer pageSize,
java.lang.Integer pageNumber)
Returns a paged list of Media that represent a given DefinedTerm instance
|
Pager<Media> |
TermServiceImpl.getMedia(DefinedTermBase definedTerm,
java.lang.Integer pageSize,
java.lang.Integer pageNumber) |
Pager<Media> |
IDescriptionService.getMedia(DescriptionElementBase descriptionElement,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of Media that are associated with a given description element
|
Pager<Media> |
DescriptionServiceImpl.getMedia(DescriptionElementBase descriptionElement,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<Media> |
IOccurrenceService.getMedia(SpecimenOrObservationBase occurence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of Media that are associated with a given occurence
|
Pager<Media> |
OccurrenceServiceImpl.getMedia(SpecimenOrObservationBase occurence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<Media> |
IOccurrenceService.getMediainHierarchy(SpecimenOrObservationBase rootOccurence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns all media attached to this occurence and its children.
|
Pager<Media> |
OccurrenceServiceImpl.getMediainHierarchy(SpecimenOrObservationBase rootOccurence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<Media> |
TaxonServiceImpl.listMedia(Taxon taxon,
java.util.Set<TaxonRelationshipEdge> includeRelationships,
java.lang.Boolean limitToGalleries,
java.lang.Boolean includeTaxonDescriptions,
java.lang.Boolean includeOccurrences,
java.lang.Boolean includeTaxonNameDescriptions,
java.util.List<java.lang.String> propertyPath) |
java.util.List<Media> |
ITaxonService.listMedia(Taxon taxon,
java.util.Set<TaxonRelationshipEdge> includeRelationships,
java.lang.Boolean limitToGalleries,
java.lang.Boolean includeTaxonDescriptions,
java.lang.Boolean includeOccurrences,
java.lang.Boolean includeTaxonNameDescriptions,
java.util.List<java.lang.String> propertyPath)
Lists all Media found in an any TaxonDescription, NameDescription,
SpecimenOrObservationBase, DnaSample Chromatograms, etc.
|
java.util.List<Media> |
TaxonServiceImpl.listTaxonDescriptionMedia(Taxon taxon,
java.util.Set<TaxonRelationshipEdge> includeRelationships,
boolean limitToGalleries,
java.util.List<java.lang.String> propertyPath) |
java.util.List<Media> |
ITaxonService.listTaxonDescriptionMedia(Taxon taxon,
java.util.Set<TaxonRelationshipEdge> includeRelationships,
boolean limitToGalleries,
java.util.List<java.lang.String> propertyPath)
Deprecated.
use
#listMedia(Taxon, Set, boolean, boolean, List) instead |
java.util.List<Media> |
IDescriptionService.listTaxonDescriptionMedia(java.util.UUID taxonUuid,
boolean limitToGalleries,
java.util.Set<MarkerType> markerTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns all
Media attached to a taxon via TaxonDescription.elements.media. |
java.util.List<Media> |
DescriptionServiceImpl.listTaxonDescriptionMedia(java.util.UUID taxonUuid,
boolean limitToGalleries,
java.util.Set<MarkerType> markerTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<Media> |
IMediaService.search(java.lang.Class<? extends Media> clazz,
java.lang.String queryString,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a Paged List of Media instances where the default field matches the String queryString (as interpreted by the Lucene QueryParser)
|
Modifier and Type | Method and Description |
---|---|
Pager<Rights> |
MediaServiceImpl.getRights(Media t,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<Rights> |
IMediaService.getRights(Media t,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Return a Pager of rights belonging to this object
|
Modifier and Type | Method and Description |
---|---|
Pager<Media> |
IMediaService.search(java.lang.Class<? extends Media> clazz,
java.lang.String queryString,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns a Paged List of Media instances where the default field matches the String queryString (as interpreted by the Lucene QueryParser)
|
UpdateResult |
MediaServiceImpl.updateCaches(java.lang.Class<? extends Media> clazz,
java.lang.Integer stepSize,
IIdentifiableEntityCacheStrategy<Media> cacheStrategy,
IProgressMonitor monitor) |
UpdateResult |
MediaServiceImpl.updateCaches(java.lang.Class<? extends Media> clazz,
java.lang.Integer stepSize,
IIdentifiableEntityCacheStrategy<Media> cacheStrategy,
IProgressMonitor monitor) |
Modifier and Type | Method and Description |
---|---|
Media |
SequenceDTO.getContigFile() |
Modifier and Type | Method and Description |
---|---|
static void |
ImagesUtility.addMediaToGallery(DescriptionBase description,
Media media) |
static void |
ImagesUtility.removeMediaFromGallery(DescriptionBase description,
Media media) |
Modifier and Type | Method and Description |
---|---|
protected Media |
CdmImportBase.getImageMedia(java.lang.String uriString,
boolean readMediaData) |
protected Media |
CdmImportBase.getImageMedia(java.lang.String uriString,
java.lang.String uriStrThumb,
boolean readMediaData)
Creates
|
protected Media |
CdmImportBase.getImageMedia(java.lang.String uriString,
java.lang.String mediumUriString,
java.lang.String uriStrThumb,
boolean readMediaData) |
Modifier and Type | Field and Description |
---|---|
protected java.util.List<Media> |
DataSet.media |
Modifier and Type | Method and Description |
---|---|
<T extends Media> |
DataSet.addMedia(java.util.Collection<T> value) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
DataSet.getMedia() |
Modifier and Type | Method and Description |
---|---|
void |
DataSet.setMedia(java.util.List<Media> value) |
Modifier and Type | Method and Description |
---|---|
Media |
MarkupImportState.getFigure(java.lang.String key) |
Media |
MarkupDocumentImport.getImageMedia(java.lang.String uriString,
boolean readMediaData) |
protected Media |
MarkupImportBase.handleFigure(MarkupImportState state,
javax.xml.stream.XMLEventReader reader,
javax.xml.stream.events.XMLEvent parentEvent,
MarkupSpecimenImport specimenImport,
MarkupNomenclatureImport nomenclatureImport) |
Modifier and Type | Method and Description |
---|---|
protected void |
MarkupImportBase.attachFigure(MarkupImportState state,
javax.xml.stream.events.XMLEvent next,
AnnotatableEntity entity,
Media figure) |
void |
MarkupImportState.registerFigure(java.lang.String key,
Media figure) |
Modifier and Type | Class and Description |
---|---|
class |
MediaKey
The class representing single-access fixed dichotomous or polytomous authored
decision keys (as opposed to
multiple-access keys ) used to identify
specimens or observations (this means to assign taxa to). |
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
DescriptionElementBase.getMedia()
Returns the list of
media (that is pictures, movies,
recorded sounds ...) this description element is based on. |
Modifier and Type | Method and Description |
---|---|
void |
DescriptionElementBase.addMedia(Media media)
|
void |
DescriptionElementBase.removeMedia(Media media)
Removes one element from the list of
media
this description element is based on. |
Modifier and Type | Method and Description |
---|---|
Media |
NamedArea.getShape() |
Modifier and Type | Method and Description |
---|---|
void |
NamedArea.setShape(Media shape) |
Modifier and Type | Method and Description |
---|---|
Media |
MediaRepresentation.getMedia() |
static Media |
Media.NewInstance()
Factory method
|
static Media |
Media.NewInstance(java.net.URI uri,
java.lang.Integer size,
java.lang.String mimeType,
java.lang.String suffix)
Factory method which creates a new media, adds a reprsentation including mime type and suffix information
and adds to the later a representation part for a given uri and size
Returns
null if uri is empty |
static Media |
ImageFile.NewMediaInstance(TimePeriod mediaCreated,
AgentBase artist,
java.net.URI uri,
java.lang.String mimeType,
java.lang.String suffix,
java.lang.Integer size,
java.lang.Integer height,
java.lang.Integer width)
Generated an instance of Media that contains one MediaRepresentation consisting of one ImageFile
|
Modifier and Type | Method and Description |
---|---|
static java.util.Map<Media,MediaRepresentation> |
MediaUtils.findPreferredMedia(java.util.List<Media> mediaList,
java.lang.Class<? extends MediaRepresentationPart> representationPartType,
java.lang.String[] mimeTypes,
java.lang.Integer widthOrDuration,
java.lang.Integer height,
java.lang.Integer size,
MediaUtils.MissingValueStrategy missingValStrat)
Filters the given List of Media by the supplied filter parameters
representationPartType ,
mimeTypes , widthOrDuration , height , size . |
java.util.Set<Media> |
IdentifiableMediaEntity.getMedia() |
java.util.Set<Media> |
IMediaEntity.getMedia()
Gets all media belonging to this object
|
java.util.Set<Media> |
IMediaDocumented.getMedia() |
Modifier and Type | Method and Description |
---|---|
void |
IdentifiableMediaEntity.addMedia(Media media) |
void |
IMediaEntity.addMedia(Media media)
Adds a media to this object
|
static MediaRepresentation |
MediaUtils.findBestMatchingRepresentation(Media media,
java.lang.Class<? extends MediaRepresentationPart> representationPartType,
java.lang.Integer size,
java.lang.Integer height,
java.lang.Integer widthOrDuration,
java.lang.String[] mimeTypes,
MediaUtils.MissingValueStrategy missingValStrategy) |
static MediaRepresentationPart |
MediaUtils.getFirstMediaRepresentationPart(Media media)
|
static MediaRepresentationPart |
MediaUtils.initFirstMediaRepresentationPart(Media media,
boolean isImage)
Creates one single
MediaRepresentationPart for the given Media
if it does not already exists. |
void |
IdentifiableMediaEntity.removeMedia(Media media) |
void |
IMediaEntity.removeMedia(Media media)
Removes a media from this object
|
protected void |
MediaRepresentation.setMedia(Media media)
Deprecated.
for internal (bidirectional) use only
|
Modifier and Type | Method and Description |
---|---|
static java.util.Map<Media,MediaRepresentation> |
MediaUtils.findPreferredMedia(java.util.List<Media> mediaList,
java.lang.Class<? extends MediaRepresentationPart> representationPartType,
java.lang.String[] mimeTypes,
java.lang.Integer widthOrDuration,
java.lang.Integer height,
java.lang.Integer size,
MediaUtils.MissingValueStrategy missingValStrat)
Filters the given List of Media by the supplied filter parameters
representationPartType ,
mimeTypes , widthOrDuration , height , size . |
Modifier and Type | Class and Description |
---|---|
class |
PhylogeneticTree
"A phylogenetic tree or evolutionary tree is a branching diagram or "tree" showing the
inferred evolutionary relationships among various biological species or other entities
based upon similarities and differences in their physical and/or genetic characteristics.
|
Modifier and Type | Method and Description |
---|---|
Media |
Sequence.getContigFile()
The contigFile containing all data and data processing for this sequencing.
|
Media |
AmplificationResult.getGelPhoto()
The photo taken from the electrophoresis result showing the quality of the amplification.
|
Media |
SingleRead.getPherogram()
The pherogram (chromatogram) which visualizes the result of this single sequence.
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<Media> |
Sequence.getPherograms()
Convenience method which computes the set of all related pherograms
|
Modifier and Type | Method and Description |
---|---|
void |
Sequence.setContigFile(Media contigFile) |
void |
AmplificationResult.setGelPhoto(Media gelPhoto) |
void |
SingleRead.setPherogram(Media pherogram) |
Modifier and Type | Method and Description |
---|---|
Media |
MediaSpecimen.getMediaSpecimen()
The media which represents this specimen.
|
Modifier and Type | Method and Description |
---|---|
void |
MediaSpecimen.setMediaSpecimen(Media mediaSpecimen) |
Modifier and Type | Method and Description |
---|---|
java.util.Set<Media> |
IDefinedTerm.getMedia()
Returns the media attached to this
term |
java.util.Set<Media> |
DefinedTermBase.getMedia() |
Modifier and Type | Method and Description |
---|---|
void |
DefinedTermBase.addMedia(Media media) |
void |
DefinedTermBase.removeMedia(Media media) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
IDescriptionElementDao.getMedia(DescriptionElementBase descriptionElement,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of Media that are associated with a given description element
|
java.util.List<Media> |
IDescriptionDao.listTaxonDescriptionMedia(java.util.UUID taxonUuid,
java.lang.Boolean restrictToGalleries,
java.util.Set<MarkerType> markerTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of Media instances, optionally filtered by parameters passed to this method.
|
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
DescriptionElementDaoImpl.getMedia(DescriptionElementBase descriptionElement,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<Media> |
DescriptionDaoImpl.listTaxonDescriptionMedia(java.util.UUID taxonUuid,
java.lang.Boolean limitToGalleries,
java.util.Set<MarkerType> markerTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
long |
MediaDaoHibernateImpl.countRights(Media media) |
java.util.List<Rights> |
MediaDaoHibernateImpl.getRights(Media media,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
OccurrenceDaoHibernateImpl.getMedia(SpecimenOrObservationBase occurence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
DefinedTermDaoImpl.getMedia(DefinedTermBase definedTerm,
java.lang.Integer pageSize,
java.lang.Integer pageNumber) |
Modifier and Type | Method and Description |
---|---|
void |
MediaAutoInitializer.initialize(Media bean) |
Modifier and Type | Method and Description |
---|---|
long |
IMediaDao.countRights(Media t)
Return a count of the rights for this media entity
|
java.util.List<Rights> |
IMediaDao.getRights(Media t,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Return a List of the rights for this media entity
|
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
IOccurrenceDao.getMedia(SpecimenOrObservationBase occurence,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of Media that are associated with a given occurence
|
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
IDefinedTermDao.getMedia(DefinedTermBase definedTerm,
java.lang.Integer pageSize,
java.lang.Integer pageNumber)
Returns a List of Media that represent a given DefinedTerm instance
|
Modifier and Type | Method and Description |
---|---|
Media |
OccurrencePortalController.doGetMediaSpecimen(java.util.UUID uuid,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response) |
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
TaxonPortalController.addTaxonomicChildrenMedia(java.lang.Boolean includeTaxonDescriptions,
java.lang.Boolean includeOccurrences,
java.lang.Boolean includeTaxonNameDescriptions,
Taxon taxon,
java.util.Set<TaxonRelationshipEdge> includeRelationships,
java.util.List<Media> media) |
java.util.List<Media> |
TaxonPortalController.doGetMedia(java.util.UUID uuid,
java.lang.Class<? extends MediaRepresentationPart> type,
java.lang.String[] mimeTypes,
UuidList relationshipUuids,
UuidList relationshipInversUuids,
java.lang.Boolean includeTaxonDescriptions,
java.lang.Boolean includeOccurrences,
java.lang.Boolean includeTaxonNameDescriptions,
java.lang.Integer widthOrDuration,
java.lang.Integer height,
java.lang.Integer size,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
|
java.util.List<Media> |
TaxonPortalController.doGetSubtreeMedia(java.util.UUID uuid,
java.lang.Class<? extends MediaRepresentationPart> type,
java.lang.String[] mimeTypes,
UuidList relationshipUuids,
UuidList relationshipInversUuids,
java.lang.Boolean includeTaxonDescriptions,
java.lang.Boolean includeOccurrences,
java.lang.Boolean includeTaxonNameDescriptions,
java.lang.Integer widthOrDuration,
java.lang.Integer height,
java.lang.Integer size,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response) |
java.util.List<Media> |
TaxonPortalController.EntityMediaContext.getMedia() |
Modifier and Type | Method and Description |
---|---|
java.util.List<Media> |
TaxonPortalController.addTaxonomicChildrenMedia(java.lang.Boolean includeTaxonDescriptions,
java.lang.Boolean includeOccurrences,
java.lang.Boolean includeTaxonNameDescriptions,
Taxon taxon,
java.util.Set<TaxonRelationshipEdge> includeRelationships,
java.util.List<Media> media) |
void |
TaxonPortalController.EntityMediaContext.setMedia(java.util.List<Media> media) |
Constructor and Description |
---|
EntityMediaContext(T entity,
java.util.List<Media> media) |
Modifier and Type | Method and Description |
---|---|
net.sf.json.JSONObject |
MediaBeanProcessor.processBeanSecondStep(Media media,
net.sf.json.JSONObject json,
net.sf.json.JsonConfig jsonConfig) |
Modifier and Type | Method and Description |
---|---|
java.lang.String |
MediaDefaultCacheStrategy.getTitleCache(Media media) |
java.lang.String |
MediaDefaultCacheStrategy.getTitleCacheByLanguage(Media media,
Language lang) |
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