Package | Description |
---|---|
eu.etaxonomy.cdm.api.service | |
eu.etaxonomy.cdm.io.specimen.abcd206.in.molecular | |
eu.etaxonomy.cdm.model.molecular |
Provides classes for DNA samples and related sequences.
|
eu.etaxonomy.cdm.persistence.dao.hibernate.occurrence | |
eu.etaxonomy.cdm.persistence.dao.occurrence |
Modifier and Type | Method and Description |
---|---|
UpdateResult |
IOccurrenceService.moveSequence(DnaSample from,
DnaSample to,
Sequence sequence)
|
UpdateResult |
OccurrenceServiceImpl.moveSequence(DnaSample from,
DnaSample to,
Sequence sequence) |
Modifier and Type | Method and Description |
---|---|
DnaSample |
AbcdDnaParser.parse(org.w3c.dom.Element item,
Abcd206ImportState state) |
DnaSample |
AbcdGgbnParser.parse(org.w3c.dom.NodeList ggbn,
DnaSample dnaSample,
Abcd206ImportState state) |
Modifier and Type | Method and Description |
---|---|
DnaSample |
AbcdGgbnParser.parse(org.w3c.dom.NodeList ggbn,
DnaSample dnaSample,
Abcd206ImportState state) |
Modifier and Type | Method and Description |
---|---|
DnaSample |
DnaSample.clone()
Clones this dna sample.
|
DnaSample |
AmplificationResult.getDnaSample()
The
dna sample which is the input for this amplification . |
DnaSample |
Sequence.getDnaSample()
The
dna sample this sequencing belongs too. |
static DnaSample |
DnaSample.NewInstance()
Factory method
|
Modifier and Type | Method and Description |
---|---|
static AmplificationResult |
AmplificationResult.NewInstance(DnaSample dnaSample) |
static AmplificationResult |
AmplificationResult.NewInstance(DnaSample dnaSample,
Amplification amplification) |
static Sequence |
Sequence.NewInstance(DnaSample dnaSample,
java.lang.String consensusSequence,
java.lang.Integer length) |
protected void |
AmplificationResult.setDnaSample(DnaSample dnaSample)
For use by DnaSample.addAmplification(ampl.) only.
|
protected void |
Sequence.setDnaSample(DnaSample dnaSample)
To be called only from
addSequence(Sequence) |
Modifier and Type | Method and Description |
---|---|
DnaSample |
OccurrenceDaoHibernateImpl.findByGeneticAccessionNumber(java.lang.String accessionNumberString,
java.util.List<java.lang.String> propertyPaths)
Returns
DerivedUnit that has the accession number and is determined to a taxon |
Modifier and Type | Method and Description |
---|---|
DnaSample |
IOccurrenceDao.findByGeneticAccessionNumber(java.lang.String accessionNumberString,
java.util.List<java.lang.String> propertyPaths)
Returns
DerivedUnit that has the accession number and is determined to a taxon |
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