Package | Description |
---|---|
eu.etaxonomy.cdm.api.service.dto | |
eu.etaxonomy.cdm.model.molecular |
Provides classes for DNA samples and related sequences.
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<SingleReadAlignment> |
SequenceDTO.getSingleReadAlignments() |
Modifier and Type | Method and Description |
---|---|
SingleReadAlignment |
Sequence.addSingleRead(SingleRead singleRead)
Convenience method to add a single read to a consensus sequence
by creating a
SingleReadAlignment . |
static SingleReadAlignment |
SingleReadAlignment.NewInstance(Sequence consensusSequence,
SingleRead singleRead) |
static SingleReadAlignment |
SingleReadAlignment.NewInstance(Sequence consensusSequence,
SingleRead singleRead,
SingleReadAlignment.Shift[] shifts,
java.lang.String editedSequence) |
Modifier and Type | Method and Description |
---|---|
java.util.Set<SingleReadAlignment> |
Sequence.getSingleReadAlignments()
The
single reads that were used to build this consensus sequence. |
Modifier and Type | Method and Description |
---|---|
void |
Sequence.addSingleReadAlignment(SingleReadAlignment singleReadAlignment) |
void |
Sequence.removeSingleReadAlignment(SingleReadAlignment singleReadAlignment) |
Copyright © 2007-2020 EDIT. All Rights Reserved.