Package | Description |
---|---|
eu.etaxonomy.cdm.io.common | |
eu.etaxonomy.cdm.io.csv.redlist.demo | |
eu.etaxonomy.cdm.io.csv.redlist.out | |
eu.etaxonomy.cdm.io.dwca.out | |
eu.etaxonomy.cdm.io.excel.taxa | |
eu.etaxonomy.cdm.io.markup | |
eu.etaxonomy.cdm.io.stream.excel | |
eu.etaxonomy.cdm.io.taxonx2013 | |
eu.etaxonomy.cdm.io.tcsrdf | |
eu.etaxonomy.cdm.io.tcsxml | |
eu.etaxonomy.cdm.model.name |
Provides classes for nomenclature and typification.
|
eu.etaxonomy.cdm.strategy.parser |
Modifier and Type | Method and Description |
---|---|
NomenclaturalCode |
ImportConfiguratorBase.getNomenclaturalCode() |
NomenclaturalCode |
IImportConfigurator.getNomenclaturalCode() |
Modifier and Type | Method and Description |
---|---|
void |
ImportConfiguratorBase.setNomenclaturalCode(NomenclaturalCode nomenclaturalCode) |
void |
IImportConfigurator.setNomenclaturalCode(NomenclaturalCode nomenclaturalCode) |
Constructor and Description |
---|
DbImportConfiguratorBase(Source source,
ICdmDataSource destination,
NomenclaturalCode code,
IInputTransformer defaultTransformer) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvDemoRecordBase.getNomCode(NomenclaturalCode nomCode) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvRecordBaseRedlist.getNomCode(NomenclaturalCode nomCode) |
Modifier and Type | Method and Description |
---|---|
NomenclaturalCode |
DwcaTaxonRecord.getNomenclaturalCode() |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
DwcaRecordBase.getNomCode(NomenclaturalCode nomCode) |
void |
DwcaTaxonRecord.setNomenclaturalCode(NomenclaturalCode nomenclaturalCode) |
Modifier and Type | Method and Description |
---|---|
static NormalExplicitImportConfigurator |
NormalExplicitImportConfigurator.NewInstance(java.net.URI uri,
ICdmDataSource destination,
NomenclaturalCode nomenclaturalCode,
DbSchemaValidation dbSchemaValidation) |
Modifier and Type | Method and Description |
---|---|
protected NomenclaturalCode |
MarkupImportBase.makeNomenclaturalCode(MarkupImportState state)
Returns the
NomenclaturalCode for this import. |
Modifier and Type | Method and Description |
---|---|
static ExcelStreamImportConfigurator |
ExcelStreamImportConfigurator.NewInstance(java.net.URI uri,
ICdmDataSource destination,
NomenclaturalCode nomenclaturalCode,
DbSchemaValidation dbSchemaValidation)
Factory method.
|
Modifier and Type | Method and Description |
---|---|
protected Rank |
TaxonXExtractor.askForRank(java.lang.String fullname,
Rank rank,
NomenclaturalCode nomenclaturalCode) |
void |
TaxonXExtractor.ReferenceBuilder.builReference(java.lang.String mref,
java.lang.String treatmentMainName,
NomenclaturalCode nomenclaturalCode,
Taxon acceptedTaxon,
Reference refMods) |
Constructor and Description |
---|
TaxonXTreatmentExtractor(NomenclaturalCode nomenclaturalCode,
Classification classification,
TaxonXImport importer,
TaxonXImportState configState,
java.util.Map<java.lang.String,Feature> featuresMap,
Reference urlSource) |
Modifier and Type | Method and Description |
---|---|
static NomenclaturalCode |
TcsRdfTransformer.nomCodeString2NomCode(java.lang.String nomCode)
Creates an cdm-NomenclaturalCode by the tcs NomenclaturalCode
|
Modifier and Type | Method and Description |
---|---|
static NomenclaturalCode |
TcsXmlTransformer.nomCodeString2NomCode(java.lang.String nomCode)
Creates an cdm-NomenclaturalCode by the tcs NomenclaturalCode
|
Modifier and Type | Method and Description |
---|---|
static NomenclaturalCode |
NomenclaturalCode.fromDtype(java.lang.String string)
Deprecated.
not relevant anymore, used only by NomenclaturalCodeUpdater
which is used for 4.0->4.1 schema update.
|
static NomenclaturalCode |
NomenclaturalCode.fromString(java.lang.String string) |
static NomenclaturalCode |
NomenclaturalCode.getByKey(java.lang.String key) |
static NomenclaturalCode |
NomenclaturalCode.getByUuid(java.util.UUID uuid) |
NomenclaturalCode |
NomenclaturalCodeEdition.getCode() |
NomenclaturalCode |
NomenclaturalCode.getKindOf() |
NomenclaturalCode |
TaxonName.getNameType() |
NomenclaturalCode |
ITaxonNameBase.getNameType() |
NomenclaturalCode |
TaxonName.getNomenclaturalCode()
Deprecated.
use
TaxonName.getNameType() instead |
static NomenclaturalCode |
NomenclaturalCode.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
|
static NomenclaturalCode[] |
NomenclaturalCode.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
Modifier and Type | Method and Description |
---|---|
java.util.Set<NomenclaturalCode> |
NomenclaturalCode.getGeneralizationOf() |
java.util.Set<NomenclaturalCode> |
NomenclaturalCode.getGeneralizationOf(boolean recursive) |
Modifier and Type | Method and Description |
---|---|
static java.util.List<NomenclaturalCodeEdition> |
NomenclaturalCodeEdition.forCode(NomenclaturalCode code) |
static Rank |
Rank.getRankByEnglishName(java.lang.String rankName,
NomenclaturalCode nc,
boolean useUnknown)
Defines the rank according to the English name.
|
static Rank |
Rank.getRankByIdInVoc(java.lang.String abbrev,
NomenclaturalCode nc)
Returns the rank identified through an abbreviated name for a given nomenclatural code.
|
static Rank |
Rank.getRankByIdInVoc(java.lang.String abbrev,
NomenclaturalCode nc,
boolean useUnknown)
Returns the rank identified through an abbreviated name for a given nomenclatural code.
|
static Rank |
Rank.getRankByName(java.lang.String rankName,
NomenclaturalCode nc)
Returns the rank identified through a name for a given nomenclatural code.
|
static Rank |
Rank.getRankByName(java.lang.String rankName,
NomenclaturalCode nc,
boolean useUnknown) |
static Rank |
Rank.getRankByNameOrIdInVoc(java.lang.String strRank,
NomenclaturalCode nc)
Returns the rank identified through a label or the identifier within the vocabulary
for a given nomenclatural code.
|
static Rank |
Rank.getRankByNameOrIdInVoc(java.lang.String strRank,
NomenclaturalCode nc,
boolean useUnknown)
Returns the rank identified through a label or the identifier within the vocabulary.
|
boolean |
NomenclaturalCode.isKindOf(NomenclaturalCode ancestor) |
protected static TaxonName |
TaxonName.NewInstance(NomenclaturalCode code,
Rank rank,
HomotypicalGroup homotypicalGroup) |
static TaxonName |
TaxonName.NewInstance(NomenclaturalCode code,
Rank rank,
java.lang.String genusOrUninomial,
java.lang.String infraGenericEpithet,
java.lang.String specificEpithet,
java.lang.String infraSpecificEpithet,
TeamOrPersonBase combinationAuthorship,
Reference nomenclaturalReference,
java.lang.String nomenclMicroRef,
HomotypicalGroup homotypicalGroup) |
static TaxonName |
TaxonNameFactory.NewNameInstance(NomenclaturalCode code,
Rank rank)
|
static TaxonName |
TaxonNameFactory.NewNameInstance(NomenclaturalCode code,
Rank rank,
HomotypicalGroup homotypicalGroup)
|
void |
TaxonName.setNameType(NomenclaturalCode nameType) |
void |
ITaxonNameBase.setNameType(NomenclaturalCode nameType) |
Constructor and Description |
---|
TaxonName(NomenclaturalCode type,
Rank rank,
HomotypicalGroup homotypicalGroup)
Class constructor: creates a new taxon name instance
only containing its
rank and
its homotypical group and
the default cache strategy . |
TaxonName(NomenclaturalCode type,
Rank rank,
java.lang.String genusOrUninomial,
java.lang.String infraGenericEpithet,
java.lang.String specificEpithet,
java.lang.String infraSpecificEpithet,
TeamOrPersonBase combinationAuthorship,
Reference nomenclaturalReference,
java.lang.String nomenclMicroRef,
HomotypicalGroup homotypicalGroup)
Class constructor: creates a new non viral taxon name instance
containing its
rank ,
its homotypical group ,
its scientific name components, its author(team) ,
its nomenclatural reference and
the default cache strategy . |
Modifier and Type | Method and Description |
---|---|
protected void |
NonViralNameParserImpl.fullAuthors(java.lang.String fullAuthorStringOrig,
TeamOrPersonBase<?>[] authors,
java.lang.Integer[] years,
NomenclaturalCode code)
Parses the fullAuthorString
|
INonViralName |
NonViralNameParserImpl.getNonViralNameInstance(java.lang.String fullString,
NomenclaturalCode code) |
INonViralName |
NonViralNameParserImpl.getNonViralNameInstance(java.lang.String fullString,
NomenclaturalCode code,
Rank rank) |
INonViralName |
NonViralNameParserImpl.parseFullName(java.lang.String fullNameString,
NomenclaturalCode nomCode,
Rank rank) |
T |
INonViralNameParser.parseFullName(java.lang.String fullName,
NomenclaturalCode nomCode,
Rank rank)
Parses the taxon name String and returns a TaxonName.
|
TaxonName |
NonViralNameParserImpl.parseReferencedName(java.lang.String fullReferenceString,
NomenclaturalCode nomCode,
Rank rank) |
T |
INonViralNameParser.parseReferencedName(java.lang.String fullReference,
NomenclaturalCode nomCode,
Rank rank) |
INonViralName |
NonViralNameParserImpl.parseSimpleName(java.lang.String simpleName,
NomenclaturalCode code,
Rank rank) |
T |
INonViralNameParser.parseSimpleName(java.lang.String simpleName,
NomenclaturalCode code,
Rank rank)
Parses the taxon name String and returns a TaxonName.
|
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