Package | Description |
---|---|
eu.etaxonomy.cdm.api.service | |
eu.etaxonomy.cdm.api.service.dto | |
eu.etaxonomy.cdm.format.taxon | |
eu.etaxonomy.cdm.io.cdm2cdm | |
eu.etaxonomy.cdm.model.taxon |
Provides classes for taxonomy including synonymy and concept synonymy.
|
eu.etaxonomy.cdm.persistence.dao.hibernate.taxon | |
eu.etaxonomy.cdm.persistence.dao.hibernate.taxonGraph | |
eu.etaxonomy.cdm.persistence.dao.taxon | |
eu.etaxonomy.cdm.remote.controller | |
eu.etaxonomy.cdm.remote.json.processor.bean |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonRelationship> |
TaxonServiceImpl.listFromTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonRelationship> |
ITaxonService.listFromTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns the TaxonRelationships (of where relationship.type == type, if this argument is supplied)
where the supplied taxon is relatedFrom.
|
java.util.List<TaxonRelationship> |
TaxonServiceImpl.listTaxonRelationships(java.util.Set<TaxonRelationshipType> types,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonRelationship> |
ITaxonService.listTaxonRelationships(java.util.Set<TaxonRelationshipType> types,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns all or a page of all taxon concept relationships in the database.
|
java.util.List<TaxonRelationship> |
TaxonServiceImpl.listToTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonRelationship> |
ITaxonService.listToTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns the TaxonRelationships (of where relationship.type == type, if this argument is supplied)
where the supplied taxon is relatedTo.
|
Pager<TaxonRelationship> |
TaxonServiceImpl.pageFromTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonRelationship> |
ITaxonService.pageFromTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns the TaxonRelationships (of where relationship.type == type, if this argument is supplied)
where the supplied taxon is relatedFrom.
|
Pager<TaxonRelationship> |
TaxonServiceImpl.pageToTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonRelationship> |
ITaxonService.pageToTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths)
Returns the TaxonRelationships (of where relationship.type == type, if this arguement is supplied)
where the supplied taxon is relatedTo.
|
Modifier and Type | Method and Description |
---|---|
TaxonRelationshipsDTO.TaxonRelationDTO |
TaxonRelationshipsDTO.addRelation(TaxonRelationship relation,
RelationshipBase.Direction direction,
java.util.List<Language> languages) |
Constructor and Description |
---|
TaxonRelationDTO(TaxonRelationship relation,
RelationshipBase.Direction direction,
java.util.List<Language> languages) |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaggedText> |
TaxonRelationshipFormatter.getTaggedText(TaxonRelationship taxonRelationship,
boolean reverse,
java.util.List<Language> languages) |
java.util.List<TaggedText> |
TaxonRelationshipFormatter.getTaggedText(TaxonRelationship taxonRelationship,
boolean reverse,
java.util.List<Language> languages,
boolean withoutName) |
Modifier and Type | Method and Description |
---|---|
protected TaxonRelationship |
Cdm2CdmImportBase.handlePersistedTaxonRelationship(TaxonRelationship taxRel) |
Modifier and Type | Method and Description |
---|---|
protected TaxonRelationship |
Cdm2CdmImportBase.handlePersistedTaxonRelationship(TaxonRelationship taxRel) |
Modifier and Type | Method and Description |
---|---|
TaxonRelationship |
Taxon.addMisappliedName(Taxon misappliedNameTaxon,
Reference citation,
java.lang.String microcitation)
Creates a new
taxon relationship (with taxon relationship type
"misapplied name for") instance where this taxon plays the target role
and adds it to the set of taxon relationships to this taxon . |
TaxonRelationship |
Taxon.addPartialMisappliedName(Taxon partialMisappliedNameTaxon,
Reference citation,
java.lang.String microcitation)
Creates a new
taxon relationship (with taxon relationship type
"partial misapplied name for") instance where this taxon plays the target role
and adds it to the set of taxon relationships to this taxon . |
TaxonRelationship |
Taxon.addPartialSynonym(Taxon partialTaxon,
Reference citation,
java.lang.String microcitation)
Creates a new
taxon relationship instance with
taxon relationship type partial synonym for where this taxon plays the target role
and adds it to the set of taxon relationships to this taxon . |
TaxonRelationship |
Taxon.addProParteMisappliedName(Taxon proParteMisappliedNameTaxon,
Reference citation,
java.lang.String microcitation)
Creates a new
taxon relationship (with taxon relationship type
"pro parte misapplied name for") instance where this taxon plays the target role
and adds it to the set of taxon relationships to this taxon . |
TaxonRelationship |
Taxon.addProparteSynonym(Taxon proParteTaxon,
Reference citation,
java.lang.String microcitation)
Creates a new
taxon relationship (with taxon relationship type
"pro parte synonym for") instance where this taxon plays the target role
and adds it to the set of taxon relationships to this taxon . |
TaxonRelationship |
Taxon.addTaxonRelation(Taxon toTaxon,
TaxonRelationshipType type,
Reference citation,
java.lang.String microcitation)
Creates a new
taxon relationship instance where this taxon
plays the source role and adds it to the set of
"taxon relationships from" belonging to this taxon. |
Modifier and Type | Method and Description |
---|---|
java.util.Set<TaxonRelationship> |
Taxon.getMisappliedNameRelations()
Returns the set of misapplied name relationships in which this taxon
plays the role of the correctly accepted taxon (target).
|
java.util.Set<TaxonRelationship> |
Taxon.getProParteAndPartialSynonymRelations()
Returns the set of pro parte or partial synonym relationships in which this taxon
plays the role of the "correctly" accepted taxon (target).
|
java.util.Set<TaxonRelationship> |
Taxon.getRelationsFromThisTaxon()
Returns the set of all
taxon relationships
between two taxa in which this taxon is involved as a source. |
java.util.Set<TaxonRelationship> |
Taxon.getRelationsToThisTaxon()
Returns the set of all
taxon relationships
between two taxa in which this taxon is involved as a target. |
java.util.Set<TaxonRelationship> |
Taxon.getTaxonRelations()
Returns the set of all
taxon relationships
between two taxa in which this taxon is involved either as a source or
as a target. |
java.util.Set<TaxonRelationship> |
Taxon.getTaxonRelations(Taxon possiblyRelatedTaxon)
If a relationships between this and the given taxon exists they will be returned.
|
Modifier and Type | Method and Description |
---|---|
void |
Taxon.addTaxonRelation(TaxonRelationship rel)
Adds an existing
taxon relationship either to the set of
taxon relationships to this taxon or to the set of
taxon relationships from this taxon . |
void |
Taxon.removeTaxonRelation(TaxonRelationship rel)
Removes one
taxon relationship from one of both sets of
taxon relationships in which this taxon is involved
either as a source or as a target . |
Modifier and Type | Method and Description |
---|---|
protected void |
Taxon.setRelationsFromThisTaxon(java.util.Set<TaxonRelationship> relationsFromThisTaxon) |
protected void |
Taxon.setRelationsToThisTaxon(java.util.Set<TaxonRelationship> relationsToThisTaxon) |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonRelationship> |
TaxonDaoHibernateImpl.getTaxonRelationships(java.util.Set<TaxonRelationshipType> types,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonRelationship> |
TaxonDaoHibernateImpl.getTaxonRelationships(Taxon taxon,
java.util.Set<TaxonRelationshipType> types,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths,
RelationshipBase.Direction direction) |
java.util.List<TaxonRelationship> |
TaxonDaoHibernateImpl.getTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths,
RelationshipBase.Direction direction) |
Modifier and Type | Method and Description |
---|---|
protected java.util.List<TaxonRelationship> |
AbstractHibernateTaxonGraphProcessor.getTaxonRelationships(Taxon relatedTaxon,
TaxonRelationshipType type,
Reference citation,
RelationshipBase.Direction direction) |
protected java.util.List<TaxonRelationship> |
AbstractHibernateTaxonGraphProcessor.taxonGraphRelationsFrom(Taxon taxon,
Reference citation) |
protected java.util.List<TaxonRelationship> |
AbstractHibernateTaxonGraphProcessor.taxonGraphRelationsTo(Taxon taxon,
Reference citation) |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonRelationship> |
ITaxonDao.getTaxonRelationships(java.util.Set<TaxonRelationshipType> types,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonRelationship> |
ITaxonDao.getTaxonRelationships(Taxon taxon,
java.util.Set<TaxonRelationshipType> type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths,
RelationshipBase.Direction direction) |
java.util.List<TaxonRelationship> |
ITaxonDao.getTaxonRelationships(Taxon taxon,
TaxonRelationshipType type,
boolean includeUnpublished,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<OrderHint> orderHints,
java.util.List<java.lang.String> propertyPaths,
RelationshipBase.Direction direction)
Returns the TaxonRelationships (of where relationship.type == type, if
this argument is supplied) where the supplied taxon either is
relatedFrom or relatedTo depending on the
direction
parameter. |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonRelationship> |
TaxonPortalController.doGetTaxonRelations(java.util.UUID uuid,
javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response)
|
Modifier and Type | Method and Description |
---|---|
net.sf.json.JSONObject |
TaxonRelationshipBeanProcessor.processBeanSecondStep(TaxonRelationship bean,
net.sf.json.JSONObject json,
net.sf.json.JsonConfig jsonConfig) |
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