eu.etaxonomy.cdm.persistence.dao.hibernate.reference

Class ReferenceDaoHibernateImpl

java.lang.Object

eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase

eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase<T>

eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase<T>

eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl<T>

eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase<Reference>

eu.etaxonomy.cdm.persistence.dao.hibernate.reference.ReferenceDaoHibernateImpl

All Implemented Interfaces:

IAnnotatableDao<Reference>, ICdmEntityDao<Reference>, IIdentifiableDao<Reference>, ISearchableDao<Reference>, ITitledDao<Reference>, IVersionableDao<Reference>, IReferenceDao

@Repository
 @Qualifier(value="referenceDaoHibernateImpl")
public class ReferenceDaoHibernateImpl
extends IdentifiableDaoBase<Reference>
implements IReferenceDao

Author:

a.mueller

Field Summary

Fields inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase

defaultField, indexedClasses

Fields inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase

defaultBeanInitializer, flushAfterNo, LEFTOUTER_OPS, type

Fields inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase

INCLUDE_UNPUBLISHED, NO_UNPUBLISHED

Constructor Summary

Constructors

Constructor and Description
ReferenceDaoHibernateImpl()

Method Summary

Modifier and Type	Method and Description
java.util.List<java.lang.Object[]>	findByIdentifierAbbrev(java.lang.String identifier, DefinedTermBase identifierType, MatchMode matchmode, java.lang.Integer limit)
java.util.List<Reference>	findByTitleAndAbbrevTitle(java.lang.Class clazz, java.lang.String queryString, MatchMode matchmode, java.util.List<org.hibernate.criterion.Criterion> criterion, java.lang.Integer pageSize, java.lang.Integer pageNumber, java.util.List<OrderHint> orderHints, java.util.List<java.lang.String> propertyPaths)
java.util.List<Reference>	getAllNomenclaturalReferences() TODO candidate for harmonization: rename to listNomenclaturalReferences
java.util.List<Reference>	getAllNotNomenclaturalReferencesForPublishing() TODO candidate for harmonization: rename to listAllNotNomenclaturalReferencesForPublishing
java.util.List<Reference>	getAllReferencesForPublishing() TODO candidate for harmonization: rename to listAllReferencesForPublishing
java.util.List<Reference>	getSubordinateReferences(Reference reference) recursively finds all references where the referenceBase given as parameter is the inReference.
java.util.List<UuidAndTitleCache<Reference>>	getUuidAndAbbrevTitleCache(java.lang.Integer limit, java.lang.String pattern, ReferenceType refType)
java.util.List<UuidAndTitleCache<Reference>>	getUuidAndAbbrevTitleCacheForAuthor(java.lang.Integer limit, java.lang.String pattern, ReferenceType refType)
java.util.List<UuidAndTitleCache<Reference>>	getUuidAndTitle()
java.util.List<UuidAndTitleCache<Reference>>	getUuidAndTitle(java.util.Set<java.util.UUID> uuids)
java.util.List<UuidAndTitleCache<Reference>>	getUuidAndTitle(java.util.Set<java.util.UUID> uuids, ReferenceType refType)
java.util.List<UuidAndTitleCache<Reference>>	getUuidAndTitleCache(java.lang.Integer limit, java.lang.String pattern, ReferenceType refType)
java.util.List<TaxonBase>	listCoveredTaxa(Reference reference, boolean includeSubordinateReferences, java.util.List<OrderHint> orderHints, java.util.List<java.lang.String> propertyPaths) searches for taxa using the following relations: taxon.name.nomenclaturalreference taxon.descriptions.descriptionElement.sources.citation taxon.descriptions.descriptionSources taxon.name.descriptions.descriptionElement.sources taxon.name.descriptions.descriptionSources
void	rebuildIndex() Index all T entities currently in the database (useful in concert with purgeIndex() to (re-)create indexes or in the case of corrupt indexes / mismatch between the database and the free-text indices)

Methods inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.IdentifiableDaoBase

count, countByIdentifier, countByMarker, countByReferenceTitle, countByReferenceTitleWithRestrictions, countByTitle, countByTitle, countByTitle, countByTitle, countByTitleWithRestrictions, countRights, countSources, countTitleCache, find, findByIdentifier, findByMarker, findByReferenceTitle, findByReferenceTitleWithRestrictions, findByTitle, findByTitle, findByTitle, findByTitle, findByTitleWithRestrictions, findOriginalSourceByIdInSource, findTitleCache, getCredits, getRights, getSources, getTitleCache, getUuidAndAbbrevTitleCache, getUuidAndTitleCache, getUuidAndTitleCache, getUuidAndTitleCache, getUuidAndTitleCache, getUuidAndTitleCacheByMarker, optimizeIndex, purgeIndex, search, suggestQuery

Methods inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.AnnotatableDaoImpl

countAnnotations, countMarkers, countMarkers, getAnnotations, getMarkers, groupMarkers

Methods inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.VersionableDaoBase

addCriteria, addOrder, checkNotInPriorView, count, count, count, countAuditEvents, countAuditEvents, countByParam, exists, findByParam, findByParamWithRestrictions, findByUuid, getAuditEventFromContext, getAuditEvents, getAuditEvents, getNextAuditEvent, getPreviousAuditEvent, list, list, list, list, load, load, load

Methods inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.CdmEntityDaoBase

addExample, addGroups, clear, count, countByParamWithRestrictions, countGroups, createCriteria, delete, entityType, findById, findByParam, findByUuid, findByUuidWithoutFlush, getAuditReader, getCriteria, getSession, getType, group, list, list, list, list, list, list, load, loadList, lock, makeAuditQuery, merge, merge, refresh, refresh, replace, save, saveAll, saveCdmObj, saveOrUpdate, saveOrUpdateAll, setDefaultBeanInitializer, setPagingParameter, setPagingParameter, update

Methods inherited from class eu.etaxonomy.cdm.persistence.dao.hibernate.common.DaoBase

addCriteria, addFieldPredicate, addLimitAndStart, addLimitAndStart, addLimitAndStart, addOrder, addOrder, addOrder, addPageSizeAndNumber, addPageSizeAndNumber, addPageSizeAndNumber, addPageSizeAndNumber, flush, getSessionFactory, orderByClause, setSessionFactory, splitCollection

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface eu.etaxonomy.cdm.persistence.dao.common.IIdentifiableDao

countByIdentifier, countByMarker, countByReferenceTitle, countByReferenceTitleWithRestrictions, countByTitle, countByTitleWithRestrictions, countRights, countSources, countTitleCache, find, findByIdentifier, findByMarker, findByReferenceTitle, findByReferenceTitleWithRestrictions, findByTitle, findByTitleWithRestrictions, findOriginalSourceByIdInSource, findTitleCache, getRights, getSources, getTitleCache, getUuidAndTitleCache, getUuidAndTitleCache, getUuidAndTitleCache, getUuidAndTitleCacheByMarker

Methods inherited from interface eu.etaxonomy.cdm.persistence.dao.common.IAnnotatableDao

countAnnotations, countMarkers, countMarkers, getAnnotations, getMarkers, groupMarkers

Methods inherited from interface eu.etaxonomy.cdm.persistence.dao.common.IVersionableDao

countAuditEvents, countAuditEvents, getAuditEvents, getAuditEvents, getNextAuditEvent, getPreviousAuditEvent

Methods inherited from interface eu.etaxonomy.cdm.persistence.dao.common.ICdmEntityDao

clear, count, count, count, count, countByParam, countByParamWithRestrictions, delete, exists, findById, findByParam, findByParam, findByParamWithRestrictions, findByUuid, findByUuidWithoutFlush, flush, getSession, getType, group, list, list, list, list, list, list, list, list, list, load, load, load, loadList, lock, merge, merge, refresh, refresh, replace, save, saveAll, saveOrUpdate, saveOrUpdateAll, update

Methods inherited from interface eu.etaxonomy.cdm.persistence.dao.common.ITitledDao

countByTitle, countByTitle, countByTitle, findByTitle, findByTitle, findByTitle

Methods inherited from interface eu.etaxonomy.cdm.persistence.dao.common.ISearchableDao

count, optimizeIndex, purgeIndex, search, suggestQuery

Constructor Detail

ReferenceDaoHibernateImpl

public ReferenceDaoHibernateImpl()

Method Detail

rebuildIndex

public void rebuildIndex()

Description copied from interface: ISearchableDao

Index all T entities currently in the database (useful in concert with purgeIndex() to (re-)create indexes or in the case of corrupt indexes / mismatch between the database and the free-text indices)

Specified by:

rebuildIndex in interface ISearchableDao<Reference>

Overrides:

rebuildIndex in class IdentifiableDaoBase<Reference>

getUuidAndTitle

public java.util.List<UuidAndTitleCache<Reference>> getUuidAndTitle()

Specified by:

getUuidAndTitle in interface IReferenceDao

getUuidAndTitle

public java.util.List<UuidAndTitleCache<Reference>> getUuidAndTitle(java.util.Set<java.util.UUID> uuids)

Specified by:

getUuidAndTitle in interface IReferenceDao

Returns:

getUuidAndTitle

public java.util.List<UuidAndTitleCache<Reference>> getUuidAndTitle(java.util.Set<java.util.UUID> uuids,
                                                                    ReferenceType refType)

Specified by:

getUuidAndTitle in interface IReferenceDao

Returns:

getUuidAndTitleCache

public java.util.List<UuidAndTitleCache<Reference>> getUuidAndTitleCache(java.lang.Integer limit,
                                                                         java.lang.String pattern,
                                                                         ReferenceType refType)

Specified by:

getUuidAndTitleCache in interface IReferenceDao

Returns:

findByIdentifierAbbrev

public java.util.List<java.lang.Object[]> findByIdentifierAbbrev(java.lang.String identifier,
                                                                 DefinedTermBase identifierType,
                                                                 MatchMode matchmode,
                                                                 java.lang.Integer limit)

Specified by:

findByIdentifierAbbrev in interface IReferenceDao

Returns:

getAllReferencesForPublishing

public java.util.List<Reference> getAllReferencesForPublishing()

Description copied from interface: IReferenceDao

TODO candidate for harmonization: rename to listAllReferencesForPublishing

Specified by:

getAllReferencesForPublishing in interface IReferenceDao

Returns:

all references marked with publish-flag

getAllNotNomenclaturalReferencesForPublishing

public java.util.List<Reference> getAllNotNomenclaturalReferencesForPublishing()

Description copied from interface: IReferenceDao

TODO candidate for harmonization: rename to listAllNotNomenclaturalReferencesForPublishing

Specified by:

getAllNotNomenclaturalReferencesForPublishing in interface IReferenceDao

Returns:

all references not used as nomenclatural reference with publish flag

getAllNomenclaturalReferences

public java.util.List<Reference> getAllNomenclaturalReferences()

Description copied from interface: IReferenceDao

TODO candidate for harmonization: rename to listNomenclaturalReferences

Specified by:

getAllNomenclaturalReferences in interface IReferenceDao

Returns:

getSubordinateReferences

public java.util.List<Reference> getSubordinateReferences(Reference reference)

Description copied from interface: IReferenceDao

recursively finds all references where the referenceBase given as parameter is the inReference.

Specified by:

getSubordinateReferences in interface IReferenceDao

Returns:

listCoveredTaxa

public java.util.List<TaxonBase> listCoveredTaxa(Reference reference,
                                                 boolean includeSubordinateReferences,
                                                 java.util.List<OrderHint> orderHints,
                                                 java.util.List<java.lang.String> propertyPaths)

Description copied from interface: IReferenceDao

searches for taxa using the following relations:

• taxon.name.nomenclaturalreference
• taxon.descriptions.descriptionElement.sources.citation
• taxon.descriptions.descriptionSources
• taxon.name.descriptions.descriptionElement.sources
• taxon.name.descriptions.descriptionSources

Specified by:

listCoveredTaxa in interface IReferenceDao

orderHints - TODO

propertyPaths - TODO

Returns:

getUuidAndAbbrevTitleCache

public java.util.List<UuidAndTitleCache<Reference>> getUuidAndAbbrevTitleCache(java.lang.Integer limit,
                                                                               java.lang.String pattern,
                                                                               ReferenceType refType)

Specified by:

getUuidAndAbbrevTitleCache in interface IReferenceDao

Returns:

getUuidAndAbbrevTitleCacheForAuthor

public java.util.List<UuidAndTitleCache<Reference>> getUuidAndAbbrevTitleCacheForAuthor(java.lang.Integer limit,
                                                                                        java.lang.String pattern,
                                                                                        ReferenceType refType)

Specified by:

getUuidAndAbbrevTitleCacheForAuthor in interface IReferenceDao

Returns:

findByTitleAndAbbrevTitle

public java.util.List<Reference> findByTitleAndAbbrevTitle(java.lang.Class clazz,
                                                           java.lang.String queryString,
                                                           MatchMode matchmode,
                                                           java.util.List<org.hibernate.criterion.Criterion> criterion,
                                                           java.lang.Integer pageSize,
                                                           java.lang.Integer pageNumber,
                                                           java.util.List<OrderHint> orderHints,
                                                           java.util.List<java.lang.String> propertyPaths)

Specified by:

findByTitleAndAbbrevTitle in interface IReferenceDao

Returns: