@Component public class GbifImport extends SpecimenImportBase<GbifImportConfigurator,SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase>>
CdmImportBase.TermMatchMode
kindOfUnitsMap, SPECIMEN_SCAN_TERM
CREATE, IMAGE_GALLERY, READ_MEDIA_DATA, uuidUserDefinedAnnotationTypeVocabulary, uuidUserDefinedExtensionTypeVocabulary, uuidUserDefinedFeatureVocabulary, uuidUserDefinedIdentifierTypeVocabulary, uuidUserDefinedKindOfUnitVocabulary, uuidUserDefinedLanguageVocabulary, uuidUserDefinedMarkerTypeVocabulary, uuidUserDefinedMeasurementUnitVocabulary, uuidUserDefinedModifierVocabulary, uuidUserDefinedNamedAreaLevelVocabulary, uuidUserDefinedNamedAreaVocabulary, uuidUserDefinedNomenclaturalStatusTypeVocabulary, uuidUserDefinedPresenceAbsenceVocabulary, uuidUserDefinedRankVocabulary, uuidUserDefinedReferenceSystemVocabulary, uuidUserDefinedStateVocabulary, uuidUserDefinedStatisticalMeasureVocabulary, uuidUserDefinedTaxonRelationshipTypeVocabulary
INCLUDE_UNPUBLISHED, ioName, NO_UNPUBLISHED
applicationContext
FEATURE_STORE, NOMREF_STORE, REFERENCE_STORE, SPECIMEN_STORE, TAXON_STORE, TAXONNAME_STORE, TEAM_STORE
Constructor and Description |
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GbifImport() |
Modifier and Type | Method and Description |
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protected boolean |
doCheck(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state) |
protected void |
doInvoke(SpecimenImportStateBase state)
invoke method to be implemented by implementing classes
|
protected void |
handleSingleUnit(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state,
java.lang.Object itemObject)
Handle a single unit
|
protected void |
importAssociatedUnits(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state,
java.lang.Object item,
DerivedUnitFacade derivedUnitFacade) |
protected boolean |
isIgnore(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state)
Returns true if this (IO-)class should be ignored during the import/export process.
|
addParentTaxon, addTaxonNode, addToSourceMap, findExistingSpecimen, getBestMatchingName, getCollection, getFacade, getIdentifiableSource, getInstitution, getOrCreateTaxonForName, getOrCreateTaxonName, handleIdentifications, linkDeterminationEvent, linkParentChildNode, makeIndividualsAssociation, parseScientificName, save, setTaxonNameByType
addOriginalSource, addOriginalSource, doubleFromString, fillMissingEpithets, fillMissingEpithetsForTaxa, getAcceptedTaxon, getAnnotationType, getByteArray, getDefaultResult, getDefaultTaxonDescription, getExtensionType, getExtensionType, getFeature, getFeature, getFeaturePlaceholder, getIdentiferType, getImageMedia, getImageMedia, getImageMedia, getKindOfUnit, getLanguage, getLanguage, getMarkedTaxonDescription, getMarkerType, getMarkerType, getMarkerType, getMarkerType, getMeasurementUnit, getModifier, getNamedArea, getNamedArea, getNamedArea, getNamedAreaLevel, getNoDataResult, getNomenclaturalStatusType, getPresenceTerm, getPresenceTerm, getRank, getReferenceSystem, getSpecimenDescription, getSpecimenDescription, getStateTerm, getStateTerm, getStatisticalMeasure, getTaxonDescription, getTaxonDescription, getTaxonNameDescription, getTaxonNameDescription, getTaxonRelationshipType, getVocabulary, intFromString, makeTree, makeTreeMemSave, NB, nullSafeBoolean, nullSafeDouble, nullSafeFloat, nullSafeInt, parseAuthorString, saveNameRelations
addObserver, addObservers, check, commitTransaction, countObservers, countSteps, fire, fireProgressEvent, fireWarningEvent, fireWarningEvent, getInstance, getObservers, getSuccessString, invoke, isBlank, isNotBlank, removeObserver, removeObservers, rollbackTransaction, startTransaction, startTransaction, updateProgress, updateProgress, warnProgress
authenticate, clearSession, getAgentService, getAmplificationService, getAnnotationService, getAuthenticationManager, getBean, getClassificationService, getCollectionService, getCommonService, getDatabaseService, getDescriptionService, getDescriptiveDataSetService, getEntityConstraintViolationService, getEntityValidationService, getEventBaseService, getFeatureNodeService, getFeatureTreeService, getGrantedAuthorityService, getGroupService, getIdentificationKeyService, getLocationService, getLongRunningTasksService, getMediaService, getMetadataService, getNameService, getOccurrenceService, getPermissionEvaluator, getPolytomousKeyNodeService, getPolytomousKeyService, getPreferenceService, getPrimerService, getProgressMonitorService, getReferenceService, getRegistrationService, getRightsService, getSequenceService, getSession, getSessionFactory, getTaxonNodeService, getTaxonService, getTermNodeService, getTermService, getTermTreeService, getTransactionManager, getUserService, getVocabularyService, NewConversation, setApplicationContext, setDataSource, setSessionFactory, setTransactionManager
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
invoke
check, countSteps, fire, updateProgress, updateProgress, warnProgress
addObserver, addObservers, countObservers, getObservers, removeObserver, removeObservers
protected boolean doCheck(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state)
doCheck
in class CdmIoBase<SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase>,ImportResult>
protected void doInvoke(SpecimenImportStateBase state)
CdmIoBase
protected void importAssociatedUnits(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state, java.lang.Object item, DerivedUnitFacade derivedUnitFacade)
protected void handleSingleUnit(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state, java.lang.Object itemObject)
SpecimenImportBase
protected boolean isIgnore(SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase> state)
CdmIoBase
isIgnore
in class CdmIoBase<SpecimenImportStateBase<SpecimenImportConfiguratorBase,SpecimenImportStateBase>,ImportResult>
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