Modifier and Type | Method and Description |
---|---|
DefinedTerm |
DerivedUnitFacade.getDerivedUnitKindOfUnit() |
DefinedTerm |
DerivedUnitFacade.getFieldUnitKindOfUnit() |
DefinedTerm |
DerivedUnitFacade.getLifeStage() |
DefinedTerm |
DerivedUnitFacade.getSex() |
Modifier and Type | Method and Description |
---|---|
void |
DerivedUnitFacade.setDerivedUnitKindOfUnit(DefinedTerm kindOfUnit) |
void |
DerivedUnitFacade.setFieldUnitKindOfUnit(DefinedTerm kindOfUnit)
Sets the kind-of-unit
|
void |
DerivedUnitFacade.setLifeStage(DefinedTerm lifeStage) |
void |
DerivedUnitFacade.setSex(DefinedTerm sex) |
Modifier and Type | Method and Description |
---|---|
UpdateResult |
TaxonNodeServiceImpl.addTaxonNodeAgentRelation(java.util.UUID taxonNodeUUID,
java.util.UUID agentUUID,
DefinedTerm relationshipType) |
UpdateResult |
ITaxonNodeService.addTaxonNodeAgentRelation(java.util.UUID taxonNodeUUID,
java.util.UUID agentUUID,
DefinedTerm relationshipType) |
<S extends T> |
IdentifiableServiceBase.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
boolean includeEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<S extends T> |
IIdentifiableEntityService.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
boolean includeCdmEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a Pager for
DTOs that hold the identifier including type, title and uuid
and the according CDM Object information (uuid, title and the object itself (optional)). |
<S extends TaxonBase> |
TaxonServiceImpl.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
TaxonNode subtreeFilter,
MatchMode matchmode,
boolean includeEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<S extends TaxonBase> |
ITaxonService.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
TaxonNode subtreeFilter,
MatchMode matchmode,
boolean includeEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
<S extends T> |
IdentifiableServiceBase.listByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
boolean includeEntity,
java.util.List<java.lang.String> propertyPaths,
java.lang.Integer limit) |
<S extends T> |
IIdentifiableEntityService.listByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
boolean includeEntity,
java.util.List<java.lang.String> propertyPaths,
java.lang.Integer limit) |
java.util.List<IdentifiedEntityDTO<Reference>> |
ReferenceServiceImpl.listByIdentifierAbbrev(java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
java.lang.Integer limit) |
java.util.List<IdentifiedEntityDTO<Reference>> |
IReferenceService.listByIdentifierAbbrev(java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
java.lang.Integer limit) |
java.util.List<IdentifiedEntityDTO<Reference>> |
ReferenceServiceImpl.listByIdentifierAndTitleCacheAbbrev(java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
java.lang.Integer limit) |
java.util.List<IdentifiedEntityDTO<Reference>> |
IReferenceService.listByIdentifierAndTitleCacheAbbrev(java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
java.lang.Integer limit) |
Modifier and Type | Method and Description |
---|---|
java.util.List<TaxonDescription> |
IDescriptionService.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionServiceImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
IDescriptionService.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
java.util.List<TaxonDescription> |
DescriptionServiceImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonDescription> |
IDescriptionService.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
Pager<TaxonDescription> |
DescriptionServiceImpl.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Pager<TaxonDescription> |
IDescriptionService.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
Pager<TaxonDescription> |
DescriptionServiceImpl.pageTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Constructor and Description |
---|
AlternativeIdentifier(DefinedTerm identifierType,
java.lang.String identifier) |
IdentifiedEntityDTO(DefinedTerm identifierType,
java.lang.String identifier,
T entity) |
IdentifiedEntityDTO(DefinedTerm identifierType,
java.lang.String identifier,
java.util.UUID entityUuid,
java.lang.String titleCache,
java.lang.String abbrevTitleCache) |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
Cdm2CdmImportBase.handlePersistedDefinedTerm(DefinedTerm term) |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
Cdm2CdmImportBase.handlePersistedDefinedTerm(DefinedTerm term) |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
CdmImportBase.getIdentiferType(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
DefinedTerm |
ImportStateBase.getIdentifierType(java.util.UUID uuid) |
protected DefinedTerm |
CdmImportBase.getKindOfUnit(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
DefinedTerm |
ImportStateBase.getKindOfUnit(java.util.UUID uuid) |
protected DefinedTerm |
CdmImportBase.getModifier(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc)
Returns a
Modifier for a given uuid by first checking if the uuid has already been used in this import, if not
checking if the Modifier exists in the database, if not creating it anew (with vocabulary etc.). |
DefinedTerm |
ImportStateBase.getModifier(java.util.UUID uuid) |
Modifier and Type | Method and Description |
---|---|
void |
ImportStateBase.putIdentifierType(DefinedTerm identifierType) |
void |
ImportStateBase.putKindOfUnit(DefinedTerm unit) |
void |
ImportStateBase.putModifier(DefinedTerm unit) |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
CdmImportBase.getIdentiferType(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
protected DefinedTerm |
CdmImportBase.getKindOfUnit(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
protected DefinedTerm |
CdmImportBase.getModifier(STATE state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc)
Returns a
Modifier for a given uuid by first checking if the uuid has already been used in this import, if not
checking if the Modifier exists in the database, if not creating it anew (with vocabulary etc.). |
Modifier and Type | Method and Description |
---|---|
DefinedTerm |
InputTransformerBase.getIdentifierTypeByKey(java.lang.String key) |
DefinedTerm |
IInputTransformer.getIdentifierTypeByKey(java.lang.String key) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvDemoRecordBase.getLifeStage(DefinedTerm stage) |
protected java.lang.String |
CsvDemoRecordBase.getSex(DefinedTerm sex) |
static java.lang.String |
CsvDemoExportTransformer.transformToGbifLifeStage(DefinedTerm stage) |
static java.lang.String |
CsvDemoExportTransformer.transformToGbifSex(DefinedTerm sex) |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
CsvRecordBaseRedlist.getLifeStage(DefinedTerm stage) |
protected java.lang.String |
CsvRecordBaseRedlist.getSex(DefinedTerm sex) |
static java.lang.String |
CsvTaxExportTransformerRedlist.transformToGbifLifeStage(DefinedTerm stage) |
static java.lang.String |
CsvTaxExportTransformerRedlist.transformToGbifSex(DefinedTerm sex) |
Modifier and Type | Method and Description |
---|---|
DefinedTerm |
DwcaVernacularRecord.getLifeStage() |
DefinedTerm |
DwcaDistributionRecord.getLifeStage() |
DefinedTerm |
DwcaVernacularRecord.getSex() |
DefinedTerm |
DwcaTypesRecord.getSex() |
Modifier and Type | Method and Description |
---|---|
protected java.lang.String |
DwcaRecordBase.getLifeStage(DefinedTerm stage) |
protected java.lang.String |
DwcaRecordBase.getSex(DefinedTerm sex) |
void |
DwcaVernacularRecord.setLifeStage(DefinedTerm lifeStage) |
void |
DwcaDistributionRecord.setLifeStage(DefinedTerm lifeStage) |
void |
DwcaVernacularRecord.setSex(DefinedTerm sex) |
void |
DwcaTypesRecord.setSex(DefinedTerm sex) |
static java.lang.String |
DwcaTaxExportTransformer.transformToGbifLifeStage(DefinedTerm stage) |
static java.lang.String |
DwcaTaxExportTransformer.transformToGbifSex(DefinedTerm sex) |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
MarkupImportBase.getIdentifierType(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
DefinedTerm |
MarkupDocumentImport.getIdentifierType(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
MarkupImportBase.getIdentifierType(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
DefinedTerm |
MarkupDocumentImport.getIdentifierType(MarkupImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String text,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
Modifier and Type | Field and Description |
---|---|
protected java.util.Map<java.lang.String,DefinedTerm> |
SpecimenImportBase.kindOfUnitsMap |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
Abcd206Import.getKindOfUnit(Abcd206ImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
Modifier and Type | Method and Description |
---|---|
protected DefinedTerm |
Abcd206Import.getKindOfUnit(Abcd206ImportState state,
java.util.UUID uuid,
java.lang.String label,
java.lang.String description,
java.lang.String labelAbbrev,
TermVocabulary<DefinedTerm> voc) |
Modifier and Type | Method and Description |
---|---|
java.util.Set<DefinedTerm> |
Institution.getTypes()
Returns the set of institution types (categories)
used to describe or circumscribe this institution's activities.
|
Modifier and Type | Method and Description |
---|---|
void |
Institution.addType(DefinedTerm type)
Adds a new institutional type (from the corresponding
vocabulary )
to the set of institution types of this institution. |
void |
Institution.removeType(DefinedTerm type)
Removes one element from the set of institution types for this institution.
|
Modifier and Type | Method and Description |
---|---|
DefinedTerm |
Identifier.getType()
The identifier type.
|
Modifier and Type | Method and Description |
---|---|
Identifier |
IdentifiableEntity.addIdentifier(java.lang.String identifier,
DefinedTerm identifierType) |
Identifier |
IIdentifiableEntity.addIdentifier(java.lang.String identifier,
DefinedTerm identifierType)
Create and add a new identifier.
|
java.util.Set<java.lang.String> |
IdentifiableEntity.getIdentifiers(DefinedTerm type) |
static <T extends IdentifiableEntity<?>> |
Identifier.NewInstance(java.lang.String identifier,
DefinedTerm type) |
static <T extends IdentifiableEntity<?>> |
Identifier.NewInstance(T identifiableEntity,
java.lang.String identifier,
DefinedTerm type) |
void |
Identifier.setType(DefinedTerm identifierType) |
Constructor and Description |
---|
Identifier(java.lang.String identifier,
DefinedTerm type) |
Modifier and Type | Method and Description |
---|---|
DefinedTerm |
Character.getPropertyModifier()
Deprecated.
experimental, may be removed in future
|
DefinedTerm |
Character.getStructureModifier() |
Modifier and Type | Method and Description |
---|---|
java.util.Set<DefinedTerm> |
DescriptionElementBase.getModifiers()
Returns the set of
modifiers used to qualify the validity of
this description element. |
java.util.Set<DefinedTerm> |
StateData.getModifiers()
Returns the set of
modifiers used to qualify the validity
of this state data. |
java.util.Set<DefinedTerm> |
IModifiable.getModifiers()
Returns the set of
modifiers used to qualify the validity
of this state data. |
java.util.Set<DefinedTerm> |
StatisticalMeasurementValue.getModifiers()
Returns the set of terms of
type Modifier used to qualify the validity
or probability of this statistical measurement value. |
java.util.List<DefinedTerm> |
DescriptionElementBase.getModifiers(TermVocabulary voc) |
java.util.Set<TermVocabulary<DefinedTerm>> |
Feature.getRecommendedModifierEnumeration()
Returns the set of
term vocabularies containing the
modifiers recommended to be used for description elements
with this feature. |
java.util.Set<DefinedTerm> |
MediaKey.getScopeRestrictions()
Returns the set of
scope restrictions corresponding to
this identification key |
java.util.Set<DefinedTerm> |
MultiAccessKey.getScopeRestrictions()
Returns the set of
scope restrictions corresponding to
this identification key |
java.util.Set<DefinedTerm> |
IIdentificationKey.getScopeRestrictions()
The scope of this key, this may be the sex, stage or any other character defined via a subclass
of
Scope |
java.util.Set<DefinedTerm> |
PolytomousKey.getScopeRestrictions()
Returns the set of
scope restrictions corresponding to
this identification key |
java.util.Set<DefinedTerm> |
TaxonDescription.getScopes()
Returns the set of
scopes (this covers mostly life stage or sex or both)
restricting the validity of this taxon description. |
protected java.util.Map<TermVocabulary,java.util.List<DefinedTerm>> |
DescriptionElementBase.makeModifierMap() |
Modifier and Type | Method and Description |
---|---|
void |
DescriptionElementBase.addModifier(DefinedTerm modifier)
Adds a
modifier to the set of modifiers
used to qualify the validity of this description element. |
void |
StateData.addModifier(DefinedTerm modifier)
Adds a
modifier to the set of modifiers
used to qualify the validity of this state data. |
void |
IModifiable.addModifier(DefinedTerm modifier)
Adds a
modifier to the set of modifiers
used to qualify the validity of this state data. |
void |
StatisticalMeasurementValue.addModifier(DefinedTerm modifier)
Adds a
modifier to the set of modifiers
used to qualify the validity of this statistical measurement value. |
void |
TaxonDescription.addScope(DefinedTerm scope)
Adds a
scope (mostly a life stage or a sex )
to the set of scopes restricting the validity of
this taxon description. |
void |
MediaKey.addScopeRestriction(DefinedTerm scopeRestriction)
Adds a
scope restriction to the set of scope restrictions
corresponding to this identification key. |
void |
MultiAccessKey.addScopeRestriction(DefinedTerm scopeRestriction)
Adds a
scope restriction to the set of scope restrictions
corresponding to this identification key. |
void |
IIdentificationKey.addScopeRestriction(DefinedTerm scope) |
void |
PolytomousKey.addScopeRestriction(DefinedTerm scopeRestriction)
Adds a
scope restriction to the set of
scope restrictions corresponding to
this identification key. |
void |
DescriptionElementBase.removeModifier(DefinedTerm modifier)
Removes one element from the set of
modifiers
used to qualify the validity of this description element. |
void |
StateData.removeModifier(DefinedTerm modifier)
Removes one element from the set of
modifiers
used to qualify the validity of this state data. |
void |
IModifiable.removeModifier(DefinedTerm modifier)
Removes one element from the set of
modifiers
used to qualify the validity of this state data. |
void |
StatisticalMeasurementValue.removeModifier(DefinedTerm modifier)
Removes one element from the set of
modifiers
used to qualify the validity of this statistical measurement value. |
void |
TaxonDescription.removeScope(DefinedTerm scope)
Removes one element from the set of
scopes
restricting the validity of this taxon description. |
void |
MediaKey.removeScopeRestriction(DefinedTerm scopeRestriction)
Removes one element from the set of
scope restrictions
corresponding to this identification key. |
void |
MultiAccessKey.removeScopeRestriction(DefinedTerm scopeRestriction)
Removes one element from the set of
scope restrictions
corresponding to this identification key. |
void |
IIdentificationKey.removeScopeRestriction(DefinedTerm scope) |
void |
PolytomousKey.removeScopeRestriction(DefinedTerm scopeRestriction)
Removes one element from the set of
scope
restrictions corresponding to this identification key. |
void |
Character.setPropertyModifier(DefinedTerm propertyModifier)
Deprecated.
experimental, may be removed in future
|
void |
Character.setStructureModifier(DefinedTerm structureModifier) |
Modifier and Type | Method and Description |
---|---|
void |
Feature.addRecommendedModifierEnumeration(TermVocabulary<DefinedTerm> recommendedModifierEnumeration)
Adds a
term vocabulary (with modifiers ) to the set of
recommended modifier vocabularies assigned
to this feature. |
void |
Feature.removeRecommendedModifierEnumeration(TermVocabulary<DefinedTerm> recommendedModifierEnumeration)
Removes one element from the set of
recommended modifier vocabularies
assigned to this feature. |
StatisticalMeasurementValue |
QuantitativeData.setAverage(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers)
Sets the statistical value for the average.
|
StatisticalMeasurementValue |
QuantitativeData.setMaximum(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers)
Sets the statistical value for the maximum.
|
StatisticalMeasurementValue |
QuantitativeData.setMinimum(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers)
Sets the statistical value for the minimum.
|
StatisticalMeasurementValue |
QuantitativeData.setSampleSize(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers)
Sets the statistical value for the sample size.
|
StatisticalMeasurementValue |
QuantitativeData.setSpecificStatisticalValue(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers,
StatisticalMeasure type)
Sets the statistical value of type
type . |
StatisticalMeasurementValue |
QuantitativeData.setStandardDeviation(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers)
Sets the statistical value for the standard deviation.
|
StatisticalMeasurementValue |
QuantitativeData.setTypicalLowerBoundary(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers)
Sets the statistical value for the typical lower boundary.
|
StatisticalMeasurementValue |
QuantitativeData.setTypicalUpperBoundary(java.lang.Float value,
java.util.Set<DefinedTerm> modifiers)
Sets the statistical value for the typical upper boundary.
|
Modifier and Type | Method and Description |
---|---|
DefinedTerm |
Amplification.getDnaMarker()
The
DNA marker used for this amplification. |
DefinedTerm |
Sequence.getDnaMarker()
Sets the
DNA marker examined and described by this sequencing. |
DefinedTerm |
Primer.getDnaMarker()
#4470
|
Modifier and Type | Method and Description |
---|---|
static Cloning |
Cloning.NewInstance(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText,
java.lang.String strain,
Primer forwardPrimer,
Primer reversePrimer) |
void |
Amplification.setDnaMarker(DefinedTerm marker) |
void |
Sequence.setDnaMarker(DefinedTerm dnaMarker) |
void |
Primer.setDnaMarker(DefinedTerm dnaMarker) |
Constructor and Description |
---|
Cloning(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText,
java.lang.String strain,
Primer forwardPrimer,
Primer reversePrimer) |
Modifier and Type | Method and Description |
---|---|
DefinedTerm |
MaterialOrMethodEvent.getDefinedMaterialOrMethod()
A defined material or method given as a defined term in a materialOrMethod
term vocabulary . |
DefinedTerm |
SpecimenOrObservationBase.getKindOfUnit() |
DefinedTerm |
SpecimenOrObservationBase.getLifeStage() |
DefinedTerm |
PreservationMethod.getMedium() |
DefinedTerm |
DeterminationEvent.getModifier() |
DefinedTerm |
SpecimenOrObservationBase.getSex() |
Modifier and Type | Method and Description |
---|---|
static MaterialOrMethodEvent |
MaterialOrMethodEvent.NewInstance(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText) |
static PreservationMethod |
PreservationMethod.NewInstance(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText) |
static PreservationMethod |
PreservationMethod.NewInstance(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText,
DefinedTerm preservationMedium,
java.lang.Double temperature) |
void |
MaterialOrMethodEvent.setDefinedMaterialOrMethod(DefinedTerm definedMaterialOrMethod) |
void |
SpecimenOrObservationBase.setKindOfUnit(DefinedTerm kindOfUnit) |
void |
SpecimenOrObservationBase.setLifeStage(DefinedTerm lifeStage) |
void |
PreservationMethod.setMedium(DefinedTerm medium) |
void |
DeterminationEvent.setModifier(DefinedTerm modifier) |
void |
SpecimenOrObservationBase.setSex(DefinedTerm sex) |
Constructor and Description |
---|
MaterialOrMethodEvent(DefinedTerm definedMaterialOrMethod,
java.lang.String methodText) |
Modifier and Type | Method and Description |
---|---|
DefinedTerm |
TaxonNodeAgentRelation.getType() |
Modifier and Type | Method and Description |
---|---|
TaxonNodeAgentRelation |
TaxonNode.addAgentRelation(DefinedTerm type,
TeamOrPersonBase<?> agent) |
protected static TaxonNodeAgentRelation |
TaxonNodeAgentRelation.NewInstance(TaxonNode taxonNode,
TeamOrPersonBase<?> agent,
DefinedTerm type) |
void |
TaxonNodeAgentRelation.setType(DefinedTerm type) |
Modifier and Type | Field and Description |
---|---|
protected static java.util.Map<java.util.UUID,DefinedTerm> |
DefinedTerm.termMap |
Modifier and Type | Method and Description |
---|---|
static DefinedTerm |
DefinedTerm.DETERMINATION_MODIFIER_AFFINIS() |
static DefinedTerm |
DefinedTerm.DETERMINATION_MODIFIER_CONFER() |
protected static DefinedTerm |
DefinedTerm.getTermByUuid(java.util.UUID uuid) |
static DefinedTerm |
DefinedTerm.IDENTIFIER_NAME_IPNI() |
static DefinedTerm |
DefinedTerm.IDENTIFIER_NAME_TROPICOS() |
static DefinedTerm |
DefinedTerm.IDENTIFIER_NAME_WFO() |
static DefinedTerm |
DefinedTerm.ITS1_MARKER() |
static DefinedTerm |
DefinedTerm.NewDnaMarkerInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewIdentifierTypeInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewInstance(TermType termType)
Creates a new empty
DefinedTerm instance. |
static DefinedTerm |
DefinedTerm.NewInstance(TermType termType,
java.util.Set<Representation> representations) |
static DefinedTerm |
DefinedTerm.NewInstance(TermType termType,
java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewInstitutionTypeInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewKindOfUnitInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewModifierInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewScopeInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewSexInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewStageInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.NewTaxonNodeAgentRelationTypeInstance(java.lang.String description,
java.lang.String label,
java.lang.String labelAbbrev) |
static DefinedTerm |
DefinedTerm.SEX_FEMALE() |
static DefinedTerm |
DefinedTerm.SEX_HERMAPHRODITE() |
static DefinedTerm |
DefinedTerm.SEX_MALE() |
static DefinedTerm |
DefinedTerm.SEX_UNKNOWN() |
static DefinedTerm |
DefinedTerm.WFO_NAME_IDENTIFIER() |
Modifier and Type | Method and Description |
---|---|
protected void |
DefinedTerm.setDefaultTerms(TermVocabulary<DefinedTerm> termVocabulary) |
Modifier and Type | Method and Description |
---|---|
<S extends T> |
IIdentifiableDao.countByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode)
Return a count of entities having an
Identifier that matches the given parameters. |
<S extends T> |
IIdentifiableDao.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchmode,
boolean includeCdmEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a tuple including the identifier type, the identifier string,
and if includeEntity is
false the CDM entities uuid, and titleCache,
otherwise the CDM entity itself |
Modifier and Type | Method and Description |
---|---|
long |
IDescriptionDao.countTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerType,
java.util.Set<DescriptionType> descriptionTypes)
Returns a count of TaxonDescription instances, optionally filtered by parameters passed to this method
|
java.util.List<TaxonDescription> |
IDescriptionDao.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScope,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths)
Returns a List of TaxonDescription instances, optionally filtered by parameters passed to this method
|
Modifier and Type | Method and Description |
---|---|
<S extends T> |
IdentifiableDaoBase.countByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchMode) |
<S extends T> |
IdentifiableDaoBase.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
MatchMode matchMode,
boolean includeEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
long |
DescriptionDaoImpl.countTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScopes,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes) |
java.util.List<TaxonDescription> |
DescriptionDaoImpl.listTaxonDescriptions(Taxon taxon,
java.util.Set<DefinedTerm> scopes,
java.util.Set<NamedArea> geographicalScopes,
java.util.Set<MarkerType> markerTypes,
java.util.Set<DescriptionType> descriptionTypes,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
<S extends TaxonBase> |
TaxonDaoHibernateImpl.countByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
TaxonNode subtreeFilter,
MatchMode matchmode) |
<S extends TaxonBase> |
TaxonDaoHibernateImpl.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
TaxonNode subtreeFilter,
MatchMode matchmode,
boolean includeEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
<S extends TaxonBase> |
ITaxonDao.countByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
TaxonNode subtreeFilter,
MatchMode matchmode)
Counts all taxa which match the given identifier (identifier type, identifier string and match mode).
|
<S extends TaxonBase> |
ITaxonDao.findByIdentifier(java.lang.Class<S> clazz,
java.lang.String identifier,
DefinedTerm identifierType,
TaxonNode subtreeFilter,
MatchMode matchmode,
boolean includeEntity,
java.lang.Integer pageSize,
java.lang.Integer pageNumber,
java.util.List<java.lang.String> propertyPaths) |
Modifier and Type | Method and Description |
---|---|
static DefinedTerm |
DeterminationModifierParser.parseDeterminationQualifier(java.lang.String qualifier) |
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